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MS009928 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009928
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S acidic ribosomal protein P2-like protein
Genome locationscaffold943_1:57276..61409
RNA-Seq ExpressionMS009928
SyntenyMS009928
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA0372571.1 unnamed protein product [Arabidopsis thaliana]1.7e-1534.38Show/hide
Query:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPC-AGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDEIY-----------------
        VG E ED +IELLL +VKG+DLAE++A GR K+AS+P   G  +AV + T+ GG         A   KKE+KKE  EESD+                   
Subjt:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPC-AGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDEIY-----------------

Query:  --------------------------------------------------------------------------LGAEAEDEKIELLLSQVKGKDIAEVV
                                                                                  +GAE ED +IELLL +VKGKD+AE++
Subjt:  --------------------------------------------------------------------------LGAEAEDEKIELLLSQVKGKDIAEVV

Query:  ACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        A GREK+AS+P+ G    AV   T+GGG    A     AAE+KKEEKKE+ E+SDD
Subjt:  ACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

EEE63896.1 hypothetical protein OsJ_18721 [Oryza sativa Japonica Group]9.4e-2243.94Show/hide
Query:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPC-AGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDEIY-----------------
        VGVE  D+R+E LLS+++G+D+ E++A GR K AS+P   G  IAV APTAAGG A       AE  KKE+K E  EESD+ +                 
Subjt:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPC-AGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDEIY-----------------

Query:  ----------------LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
                        +G EA DE++E LLS+++GKDI EV+A GREK AS+P+ G    AV   TA GG A+       A EAKKEEK E+ E+SDD
Subjt:  ----------------LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

TVU45115.1 hypothetical protein EJB05_04588 [Eragrostis curvula]1.1e-1740.29Show/hide
Query:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPCAGAAIAVGAPT-AAGGAAPAVASVAAEPEKKEDKKEVVEESDE-------------------
        VG E++++++ELLLSQ+ G+D+ E++A GR K AS+P  G  +AV A   +AGGAAPA  +      KKE+K E  EESD+                   
Subjt:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPCAGAAIAVGAPT-AAGGAAPAVASVAAEPEKKEDKKEVVEESDE-------------------

Query:  IYL----------------------GAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKED
         YL                      G E ++EK+ELLLSQ+ GKDI E++A GREK AS+P  G   A      A GG       A  AAE+KKEEK E+
Subjt:  IYL----------------------GAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKED

Query:  VEDSDD
         E+SDD
Subjt:  VEDSDD

XP_022143770.1 60S acidic ribosomal protein P2-2-like [Momordica charantia]3.6e-2998.78Show/hide
Query:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        +GAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
Subjt:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

XP_022143771.1 60S acidic ribosomal protein P2A-like [Momordica charantia]5.2e-2897.5Show/hide
Query:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPCAGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDE
        VGVEVEDDRIELLLSQVKG DLAEIVACGR KMASIPCAGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDE
Subjt:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPCAGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDE

TrEMBL top hitse value%identityAlignment
A0A5J9WB45 Uncharacterized protein5.2e-1840.29Show/hide
Query:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPCAGAAIAVGAPT-AAGGAAPAVASVAAEPEKKEDKKEVVEESDE-------------------
        VG E++++++ELLLSQ+ G+D+ E++A GR K AS+P  G  +AV A   +AGGAAPA  +      KKE+K E  EESD+                   
Subjt:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPCAGAAIAVGAPT-AAGGAAPAVASVAAEPEKKEDKKEVVEESDE-------------------

Query:  IYL----------------------GAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKED
         YL                      G E ++EK+ELLLSQ+ GKDI E++A GREK AS+P  G   A      A GG       A  AAE+KKEEK E+
Subjt:  IYL----------------------GAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKED

Query:  VEDSDD
         E+SDD
Subjt:  VEDSDD

A0A5S9X1S0 (thale cress) hypothetical protein8.3e-1634.38Show/hide
Query:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPC-AGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDEIY-----------------
        VG E ED +IELLL +VKG+DLAE++A GR K+AS+P   G  +AV + T+ GG         A   KKE+KKE  EESD+                   
Subjt:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPC-AGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDEIY-----------------

Query:  --------------------------------------------------------------------------LGAEAEDEKIELLLSQVKGKDIAEVV
                                                                                  +GAE ED +IELLL +VKGKD+AE++
Subjt:  --------------------------------------------------------------------------LGAEAEDEKIELLLSQVKGKDIAEVV

Query:  ACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        A GREK+AS+P+ G    AV   T+GGG    A     AAE+KKEEKKE+ E+SDD
Subjt:  ACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

A0A6J1CPQ6 60S acidic ribosomal protein P2-2-like1.7e-2998.78Show/hide
Query:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        +GAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
Subjt:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

A0A6J1CQB9 60S acidic ribosomal protein P2A-like2.5e-2897.5Show/hide
Query:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPCAGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDE
        VGVEVEDDRIELLLSQVKG DLAEIVACGR KMASIPCAGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDE
Subjt:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPCAGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDE

B9FPV2 Uncharacterized protein4.6e-2243.94Show/hide
Query:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPC-AGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDEIY-----------------
        VGVE  D+R+E LLS+++G+D+ E++A GR K AS+P   G  IAV APTAAGG A       AE  KKE+K E  EESD+ +                 
Subjt:  VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPC-AGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDEIY-----------------

Query:  ----------------LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
                        +G EA DE++E LLS+++GKDI EV+A GREK AS+P+ G    AV   TA GG A+       A EAKKEEK E+ E+SDD
Subjt:  ----------------LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

SwissProt top hitse value%identityAlignment
O01725 60S acidic ribosomal protein P26.6e-1050Show/hide
Query:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        +G +AEDE++  ++ ++KGKDI EV+A GR K++S+P+ G VAAA G    GGG A+    A  AAE KKEEKKE+ E+  D
Subjt:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

P41099 60S acidic ribosomal protein P26.0e-1152.63Show/hide
Query:  EDKKEVVEESDEIYLGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSD
        ED K ++       +GA+A+D+KIELLLSQVKGKDI E++A GRE++AS+P+ G VA A      GGGDA AA    AA E KKEEK E+  D +
Subjt:  EDKKEVVEESDEIYLGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSD

P46252 60S acidic ribosomal protein P2A1.6e-0845.05Show/hide
Query:  AAPAVASVAAEPEKKEDKKEVVEESDEIYLGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKE
        AA  +A +A       D    + ES    +G E ++EK+ELLLSQ+ GKDI E++A GREK AS+P  G   A      A GG       A  AAEAKKE
Subjt:  AAPAVASVAAEPEKKEDKKEVVEESDEIYLGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKE

Query:  EKKEDVEDSDD
        EK E+ E+SDD
Subjt:  EKKEDVEDSDD

P51407 60S acidic ribosomal protein P2-14.9e-1357.32Show/hide
Query:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        +GAE ED +IELLL +VKGKD+AE++A GREK+AS+P+ G    AV   T+GGG    A     AAE+KKEEKKE+ E+SDD
Subjt:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

Q9SLF7 60S acidic ribosomal protein P2-22.9e-1357.32Show/hide
Query:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        +GAE ED +IELLL +VKGKD+AE++A GREK+AS+P+ G    AV   T+GGG    A    +AAE+KKEEKKE+ E+SDD
Subjt:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family2.0e-1457.32Show/hide
Query:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        +GAE ED +IELLL +VKGKD+AE++A GREK+AS+P+ G    AV   T+GGG    A    +AAE+KKEEKKE+ E+SDD
Subjt:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

AT2G27710.2 60S acidic ribosomal protein family2.0e-1457.32Show/hide
Query:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        +GAE ED +IELLL +VKGKD+AE++A GREK+AS+P+ G    AV   T+GGG    A    +AAE+KKEEKKE+ E+SDD
Subjt:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

AT2G27710.3 60S acidic ribosomal protein family2.0e-1457.32Show/hide
Query:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        +GAE ED +IELLL +VKGKD+AE++A GREK+AS+P+ G    AV   T+GGG    A    +AAE+KKEEKKE+ E+SDD
Subjt:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

AT2G27720.1 60S acidic ribosomal protein family3.5e-1457.32Show/hide
Query:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        +GAE ED +IELLL +VKGKD+AE++A GREK+AS+P+ G    AV   T+GGG    A     AAE+KKEEKKE+ E+SDD
Subjt:  LGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD

AT2G27720.3 60S acidic ribosomal protein family1.6e-1455.95Show/hide
Query:  IYLGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
        + +GAE ED +IELLL +VKGKD+AE++A GREK+AS+P+ G    AV   T+GGG    A     AAE+KKEEKKE+ E+SDD
Subjt:  IYLGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGGAGTTGAGGTTGAAGATGACAGGATTGAGCTGCTTCTTTCCCAAGTTAAGGGCAGAGATTTAGCAGAGATTGTTGCCTGTGGAAGGGCGAAGATGGCATCAATTCC
TTGTGCCGGTGCTGCAATTGCTGTGGGCGCACCAACTGCAGCCGGTGGTGCTGCTCCTGCTGTTGCCTCTGTTGCTGCCGAGCCTGAGAAGAAAGAGGACAAGAAGGAAG
TTGTTGAGGAGTCTGATGAAATTTATCTTGGAGCTGAAGCTGAAGATGAAAAGATTGAGCTGCTCCTTTCTCAAGTTAAGGGTAAGGATATAGCAGAGGTTGTTGCCTGC
GGGAGGGAGAAGATGGCATCTCTACCTGCCCGCGGTGTCGTTGCAGCTGCTGTTGGTGTGCTCACTGCCGGTGGGGGCGATGCTTCCGCTGCCACGGCTGCTCTGGCTGC
AGCTGAGGCTAAGAAAGAGGAGAAGAAGGAAGATGTTGAGGATTCTGATGATGTA
mRNA sequenceShow/hide mRNA sequence
GTTGGAGTTGAGGTTGAAGATGACAGGATTGAGCTGCTTCTTTCCCAAGTTAAGGGCAGAGATTTAGCAGAGATTGTTGCCTGTGGAAGGGCGAAGATGGCATCAATTCC
TTGTGCCGGTGCTGCAATTGCTGTGGGCGCACCAACTGCAGCCGGTGGTGCTGCTCCTGCTGTTGCCTCTGTTGCTGCCGAGCCTGAGAAGAAAGAGGACAAGAAGGAAG
TTGTTGAGGAGTCTGATGAAATTTATCTTGGAGCTGAAGCTGAAGATGAAAAGATTGAGCTGCTCCTTTCTCAAGTTAAGGGTAAGGATATAGCAGAGGTTGTTGCCTGC
GGGAGGGAGAAGATGGCATCTCTACCTGCCCGCGGTGTCGTTGCAGCTGCTGTTGGTGTGCTCACTGCCGGTGGGGGCGATGCTTCCGCTGCCACGGCTGCTCTGGCTGC
AGCTGAGGCTAAGAAAGAGGAGAAGAAGGAAGATGTTGAGGATTCTGATGATGTA
Protein sequenceShow/hide protein sequence
VGVEVEDDRIELLLSQVKGRDLAEIVACGRAKMASIPCAGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDEIYLGAEAEDEKIELLLSQVKGKDIAEVVAC
GREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDDV