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MS009982 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009982
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHistone H2A
Genome locationscaffold223:152220..152348
RNA-Seq ExpressionMS009982
SyntenyMS009982
Gene Ontology termsGO:0031507 - heterochromatin assembly (biological process)
GO:0005694 - chromosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7021204.1 unnamed protein product [Microthlaspi erraticum]8.8e-0459.57Show/hide
Query:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        M+S  KV+KG    RGGGP+NKP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
KAG2310327.1 hypothetical protein Bca52824_021884 [Brassica carinata]8.8e-0459.57Show/hide
Query:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        M+SG KV+KG    RGGGP+ KP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
XP_009125454.1 probable histone H2A.4 [Brassica rapa]8.8e-0459.57Show/hide
Query:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        M+SG KV+KG    RGGGP+ KP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
XP_021609460.1 histone H2A [Manihot esculenta]8.8e-0459.57Show/hide
Query:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        MESG KV+KG    +GGGP+ KP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
XP_022143711.1 histone H2A [Momordica charantia]5.1e-0459.57Show/hide
Query:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        M+SG K +KG    RGGGP+ KP+SRSVK  L F VG+I  YLKN R
Subjt:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
TrEMBL top hitse value%identityAlignment
A0A1J3GY35 Histone H2A4.2e-0459.57Show/hide
Query:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        M+S  KV+KG    RGGGP+NKP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
A0A5D3BQ44 Histone H2A4.2e-0457.45Show/hide
Query:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        ME+G K++KG    +GGGP+ KP+SRSVK  L F VG+I  YLKN R
Subjt:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
A0A6I9QAH0 Histone H2A4.2e-0459.57Show/hide
Query:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        ME+G KV+KG    RGGGP+ KP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
A0A6J1CR43 Histone H2A2.5e-0459.57Show/hide
Query:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        M+SG K +KG    RGGGP+ KP+SRSVK  L F VG+I  YLKN R
Subjt:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
M4EJA3 Histone H2A4.2e-0459.57Show/hide
Query:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        M+SG KV+KG    RGGGP+ KP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
SwissProt top hitse value%identityAlignment
A2Y5G8 Probable histone H2A.42.4e-0456Show/hide
Query:  MESGDKVEK-----GR--GGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        ME G KV K     GR  GGGP+ KP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEK-----GR--GGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
P19177 Histone H2A9.1e-0452.17Show/hide
Query:  MESGDKVEK---GRGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        ME+  K +K   GR GGPR K ++RSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEK---GRGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
Q6L500 Probable histone H2A.42.4e-0456Show/hide
Query:  MESGDKVEK-----GR--GGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        ME G KV K     GR  GGGP+ KP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEK-----GR--GGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
Q9LZ46 Probable histone H2A.41.3e-0556.25Show/hide
Query:  MESGDKVEKG-----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        M+SG KV+KG      GGGP+ KP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEKG-----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
Q9M531 Histone H2A4.8e-0551.06Show/hide
Query:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        M++G K++KG    +GGGP+ KP+SRSVK  L F VG+I  +LK  R
Subjt:  MESGDKVEKG----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
Arabidopsis top hitse value%identityAlignment
AT5G02560.1 histone H2A 129.0e-0756.25Show/hide
Query:  MESGDKVEKG-----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        M+SG KV+KG      GGGP+ KP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEKG-----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
AT5G02560.2 histone H2A 129.0e-0756.25Show/hide
Query:  MESGDKVEKG-----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR
        M+SG KV+KG      GGGP+ KP+SRSVK  L F VG+I  YLK  R
Subjt:  MESGDKVEKG-----RGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTGGCGACAAGGTGGAAAAAGGCAGGGGCGGCGGTCCTAGAAATAAGCCGATGTCTCGCTCTGTGAAAGTCAGACTGCACTTTTCGGTTGGCAAAATC
AGCCACTACTTGAAGAACCGACGC
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCTGGCGACAAGGTGGAAAAAGGCAGGGGCGGCGGTCCTAGAAATAAGCCGATGTCTCGCTCTGTGAAAGTCAGACTGCACTTTTCGGTTGGCAAAATC
AGCCACTACTTGAAGAACCGACGC
Protein sequenceShow/hide protein sequence
MESGDKVEKGRGGGPRNKPMSRSVKVRLHFSVGKISHYLKNRR