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MS009984 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009984
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationscaffold223:202832..203002
RNA-Seq ExpressionMS009984
SyntenyMS009984
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
InterPro domainsIPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577428.1 Protein LHCP TRANSLOCATION DEFECT, partial [Cucurbita argyrosperma subsp. sororia]1.6e-0850.6Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKK
        FNY+GMLAVEGTY++MEALLSQDIHPVD  L           L+ELLRAGA                      DFILNF+V+K
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKK
XP_004152919.1 protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]4.1e-0951.19Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
        FNY+GMLAVEGTY++MEALLSQDIHPVD  L           L+ELLRAGA+                     DFILNF+ KKA
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
XP_022150983.1 protein LHCP TRANSLOCATION DEFECT [Momordica charantia]8.3e-1053.57Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
        FNY+GMLAVEGTY++MEALLSQDIHPVD  L           L+ELLRAGA                      DFILNFAVKKA
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]1.6e-0850.6Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKK
        FNY+GMLAVEGTY++MEALLSQDIHPVD  L           L+ELLRAGA                      DFILNF+V+K
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKK
XP_038903413.1 protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]7.0e-0951.19Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
        FNY+GMLAVEGTY++MEALLSQDIHPVD  L           L+ELLRAGAN                     DFILN +VK A
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein2.0e-0951.19Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
        FNY+GMLAVEGTY++MEALLSQDIHPVD  L           L+ELLRAGA+                     DFILNF+ KKA
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT9.9e-0950Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
        FNY+GMLAVEGTY++MEALLSQDIHPVD  L           L+ELLRAGA+                     DFIL F+ KKA
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
A0A6J1DAX7 protein LHCP TRANSLOCATION DEFECT4.0e-1053.57Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
        FNY+GMLAVEGTY++MEALLSQDIHPVD  L           L+ELLRAGA                      DFILNFAVKKA
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKKA
A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT7.6e-0950.6Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKK
        FNY+GMLAVEGTY++MEALLSQDIHPVD  L           L+ELLRAGA                      DFILNF+V+K
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKK
A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT7.6e-0950.6Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKK
        FNY+GMLAVEGTY++MEALLSQDIHPVD  L           L+ELLRAGA                      DFILNF+V+K
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN--------------------SDFILNFAVKK
SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT3.9e-1062.96Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGANSD
        FNY+GMLAVEGTY++MEALL+QDIHPVD  L           L+ELLRAGA  D
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGANSD
A3BKF2 Protein LHCP TRANSLOCATION DEFECT3.9e-1062.96Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGANSD
        FNY+GMLAVEGTY++MEALL+QDIHPVD  L           L+ELLRAGA  D
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGANSD
Q8VY88 Protein LHCP TRANSLOCATION DEFECT1.4e-0755.77Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN
        FNY+GMLAVEGTY +MEALL+ +IHPVD  L           ++ELL+AGA+
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN
Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein9.8e-0955.77Show/hide
Query:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN
        FNY+GMLAVEGTY +MEALL+ +IHPVD  L           ++ELL+AGA+
Subjt:  FNYVGMLAVEGTYEEMEALLSQDIHPVDSFL-------TNQNLKELLRAGAN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTAACTACGTGGGAATGCTAGCTGTGGAAGGGACATATGAAGAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGGACAGTTTTCTGACAAACCAAAAC
TTGAAAGAACTATTGAGAGCTGGAGCTAATTCTGATTTTATTCTTAATTTTGCTGTTAAAAAGGCA
mRNA sequenceShow/hide mRNA sequence
TTTAACTACGTGGGAATGCTAGCTGTGGAAGGGACATATGAAGAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGGACAGTTTTCTGACAAACCAAAAC
TTGAAAGAACTATTGAGAGCTGGAGCTAATTCTGATTTTATTCTTAATTTTGCTGTTAAAAAGGCA
Protein sequenceShow/hide protein sequence
FNYVGMLAVEGTYEEMEALLSQDIHPVDSFLTNQNLKELLRAGANSDFILNFAVKKA