; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS009985 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009985
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold223:210835..211086
RNA-Seq ExpressionMS009985
SyntenyMS009985
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG69190.1 hypothetical protein EZV62_004125 [Acer yangbiense]9.4e-1044.58Show/hide
Query:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDSYCI
        W P P+G  K+NTDA LD    V G+GVVIRDC GHVM S       ++     EA++V  G RL+ E  L P  +E DS  +
Subjt:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDSYCI

XP_015389224.1 uncharacterized protein LOC107178480 [Citrus sinensis]1.6e-0944.3Show/hide
Query:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMD
        W+PPP G  K N DAA++ E++  GLGVVIRD +G ++++A +   +   V  AEA +VNFG+++  E  L P +LE D
Subjt:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMD

XP_023882817.1 uncharacterized protein LOC111995143 [Quercus suber]6.5e-1143.37Show/hide
Query:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDSYCI
        W PPPAG+ K N DAAL  ER+  G+GVVIRDC G ++ + S ++     V+ AEA++ +  ++L+ E+ LF  + E DS C+
Subjt:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDSYCI

XP_023904880.1 uncharacterized protein LOC112016554 [Quercus suber]2.7e-0943.75Show/hide
Query:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDS
        W PPPAG  K N DAAL  ER+  G+GVVIRDC G ++ + S ++     V+ AEA++ +  ++L+ E+ LF  + E DS
Subjt:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDS

XP_024041962.1 uncharacterized protein LOC112099092 [Citrus clementina]1.6e-0944.3Show/hide
Query:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMD
        W+PPP G  K N DAA++ E++  GLGVVIRD +G ++++A +   +   V  AEA +VNFG+++  E  L P +LE D
Subjt:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMD

TrEMBL top hitse value%identityAlignment
A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)3.8e-0943.21Show/hide
Query:  VWVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDS
        +W PP     K+NTDAALD E  V GLG +IR+  G VM + +S+  +   V++AEA+++  G++L+ E+AL P ++E DS
Subjt:  VWVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDS

A0A1S8ACU2 Ribonuclease H-like superfamily protein4.5e-1044.3Show/hide
Query:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMD
        W+PPP G  K N DAA++ E++  GLGVVIRD +G ++++A +   +   V  AEA +VNFG+++  E +L P +LE D
Subjt:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMD

A0A5C7GQX3 RNase H domain-containing protein3.8e-0942.17Show/hide
Query:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDSYCI
        W+ PP G+ K+NTDAAL+ + +  G+GVVIR+  G VMLS+           +AEA++V  G+RL++    FP VLE D+  +
Subjt:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDSYCI

A0A5C7IIT4 Uncharacterized protein4.5e-1044.58Show/hide
Query:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDSYCI
        W P P+G  K+NTDA LD    V G+GVVIRDC GHVM S       ++     EA++V  G RL+ E  L P  +E DS  +
Subjt:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDSYCI

B9SH25 RNase H domain-containing protein3.8e-0941.25Show/hide
Query:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDS
        W PP  GLLK++TDAA+ F++++ GLG+V+RD  G V L  S  +   + V++ EAM++  G+ ++    L+P V+E DS
Subjt:  WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTTGGGTTCCTCCTCCGGCTGGCTTGCTTAAGGTTAATACTGATGCTGCTTTAGATTTCGAGCGATCTGTGCCTGGTTTGGGTGTAGTTATTCGAGATTGTAAT
GGGCATGTGATGCTTTCGGCTTCTTCACAAGTAGCACATATGGTAGGTGTTGACCTGGCGGAGGCTATGTCAGTGAACTTTGGAATTCGGCTATCTCAGGAGATG
GCTTTGTTTCCGTGTGTTCTGGAAATGGATTCATACTGTATC
mRNA sequenceShow/hide mRNA sequence
GTTTGGGTTCCTCCTCCGGCTGGCTTGCTTAAGGTTAATACTGATGCTGCTTTAGATTTCGAGCGATCTGTGCCTGGTTTGGGTGTAGTTATTCGAGATTGTAAT
GGGCATGTGATGCTTTCGGCTTCTTCACAAGTAGCACATATGGTAGGTGTTGACCTGGCGGAGGCTATGTCAGTGAACTTTGGAATTCGGCTATCTCAGGAGATG
GCTTTGTTTCCGTGTGTTCTGGAAATGGATTCATACTGTATC
Protein sequenceShow/hide protein sequence
VWVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDSYCI