; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS009987 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS009987
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC5-like
Genome locationscaffold223:225246..225332
RNA-Seq ExpressionMS009987
SyntenyMS009987
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006364438.1 PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Solanum tuberosum]7.7e-0475.86Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LDRLGL+RYCCR+ML+T V+FIE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
XP_022157220.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like [Momordica charantia]4.4e-07100Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LDRLGLVRYCCRQMLITTVNFIERLLEYN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
TrEMBL top hitse value%identityAlignment
A0A6J1DSH9 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like2.1e-07100Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LDRLGLVRYCCRQMLITTVNFIERLLEYN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
SwissProt top hitse value%identityAlignment
O13877 DNA-directed RNA polymerases I, II, and III subunit RPABC51.6e-0465.52Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD+LGL RYCCR+M++T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC59.5e-0568.97Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD L LVRYCCR+ML+T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
Q75BV8 DNA-directed RNA polymerases I, II, and III subunit RPABC53.6e-0462.07Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        L RLGL RYCCR+M++T V+ IE+ L YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 101.6e-0468.97Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD L LVRYCCR+ML+T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein1.9e-0572.41Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD LGLVRYCCR+ML+T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit1.1e-0568.97Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD L LVRYCCR+ML+T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
AT1G61700.1 RNA polymerases N / 8 kDa subunit1.4e-0672.41Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD LGLVRYCCR+ML+T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGATCGTCTAGGATTAGTCCGTTATTGTTGTAGGCAAATGCTCATCACGACAGTCAATTTCATTGAGAGGCTTCTTGAGTACAAT
mRNA sequenceShow/hide mRNA sequence
TTGGATCGTCTAGGATTAGTCCGTTATTGTTGTAGGCAAATGCTCATCACGACAGTCAATTTCATTGAGAGGCTTCTTGAGTACAAT
Protein sequenceShow/hide protein sequence
LDRLGLVRYCCRQMLITTVNFIERLLEYN