CuGenDBv2

Gene ID	MS010028
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L35
Genome location	scaffold779:67848..69049
RNA-Seq Expression	MS010028
Synteny	MS010028
Gene Ontology terms	GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001854 - Ribosomal protein L29/L35 IPR036049 - Ribosomal protein L29/L35 superfamily IPR045059 - 60S ribosomal protein L35

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7031634.1 60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-51

95.93

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKKE+Y+PLRKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

XP_004149815.1 60S ribosomal protein L35 [Cucumis sativus]

2.5e-51

96.75

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELRQKSKADLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTERQKKKE+YFPLRKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

XP_008463526.1 PREDICTED: 60S ribosomal protein L35 [Cucumis melo]

1.9e-51

96.75

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELRQKSKADLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTERQKKKE+YFPLRKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

XP_022134532.1 60S ribosomal protein L35 [Momordica charantia]

2.2e-52

98.37

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTERQKKKE+YFPLRKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

XP_022939961.1 60S ribosomal protein L35 [Cucurbita moschata]

2.5e-51

95.93

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKKE+Y+PLRKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQT2 Uncharacterized protein

1.2e-51

96.75

Show/hide

Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELRQKSKADLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTERQKKKE+YFPLRKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

A0A1S3CJH2 60S ribosomal protein L35

9.2e-52

96.75

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELRQKSKADLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTERQKKKE+YFPLRKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

A0A6J1BZV3 60S ribosomal protein L35

1.1e-52

98.37

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTERQKKKE+YFPLRKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

A0A6J1FH81 60S ribosomal protein L35

1.2e-51

95.93

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKKE+Y+PLRKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

A0A6J1JVN4 60S ribosomal protein L35

1.2e-51

95.93

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKKE+Y+PLRKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

SwissProt top hits

e value

%identity

Alignment

O80626 60S ribosomal protein L35-2

2.8e-50

90.24

Show/hide

Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELR+KSKADL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKKE+YFP+RKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

Q9LZ41 60S ribosomal protein L35-4

1.1e-49

89.43

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKKE+YFP+RKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

Q9M3D2 60S ribosomal protein L35-3

3.1e-49

88.62

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELR KSK+DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKK++YFP+RKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

Q9M5L0 60S ribosomal protein L35

4.4e-51

91.06

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELRQK+KA+LL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ 
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKKE+YFP+RKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

Q9SF53 60S ribosomal protein L35-1

6.3e-50

89.43

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELR+KSK+DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKKE+YFP+RKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39390.1 Ribosomal L29 family protein

2.0e-51

90.24

Show/hide

Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELR+KSKADL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKKE+YFP+RKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

AT3G09500.1 Ribosomal L29 family protein

4.5e-51

89.43

Show/hide

Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELR+KSK+DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKKE+YFP+RKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

AT3G55170.1 Ribosomal L29 family protein

2.2e-50

88.62

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELR KSK+DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKK++YFP+RKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

AT3G55170.2 Ribosomal L29 family protein

2.2e-50

88.62

Show/hide

Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELR KSK+DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKK++YFP+RKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

AT5G02610.1 Ribosomal L29 family protein

7.7e-51

89.43

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Query:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        +ARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTERQKKKEIYFPLRKYAIKV
        SLKTER+KKKE+YFP+RKYAIKV
Subjt:  SLKTERQKKKEIYFPLRKYAIKV

Sequences

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CDS sequence

Show/hide CDS sequence

GTAGCGAGGATCAAGGTTCACGAGTTGAGGCAGAAATCAAAGGCGGATCTGTTGACGCAGCTTAAGGATCTTAAGGCGGAGCTTGCTCTCCTTCGTGTCGCCAAAGTCAC
CGGCGGTGCCCCGAACAAGCTATCCAAAATCAAGGTGGTGAGATTGTCGATCGCTCAGGTCTTGACGGTGATTTCGCAGAAGCAGAAGGCGGCATTGAGAGAAGCGTACA
AGAAGAAGAAACTTTTGCCTCTCGATCTGCGTCCAAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAGCACCAGGCCTCCTTGAAAACTGAGAGACAGAAGAAGAAA
GAGATCTACTTTCCATTGAGGAAATATGCTATTAAGGTG

mRNA sequence

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Protein sequence

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VARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKK
EIYFPLRKYAIKV

MS010028 (gene) of Bitter gourd (TR) v1 genome