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MS010037 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010037
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpentatricopeptide repeat-containing protein At3g58590-like
Genome locationscaffold779:111276..111386
RNA-Seq ExpressionMS010037
SyntenyMS010037
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008456417.1 PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Cucumis melo]4.4e-0458.97Show/hide
Query:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
        + S+H H VEA+K+I ++PFP  + LWR FLEGCKR RT
Subjt:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
XP_022133878.1 pentatricopeptide repeat-containing protein At3g58590-like [Momordica charantia]5.2e-0564.1Show/hide
Query:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
        + S+H H    +KLIVT+PFP  +FLWRSFLEGCKR RT
Subjt:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
XP_023532810.1 pentatricopeptide repeat-containing protein At3g58590 [Cucurbita pepo subsp. pepo]5.8e-0461.54Show/hide
Query:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
        + STH   VEA+K+I ++PFP  + LWRSFLEGCKR RT
Subjt:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
XP_038902940.1 pentatricopeptide repeat-containing protein At3g58590 [Benincasa hispida]2.0e-0458.97Show/hide
Query:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
        + S+H H VEA+K+I ++PFP  + LWR+FLEGCKR RT
Subjt:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
TrEMBL top hitse value%identityAlignment
A0A1S3C2S6 pentatricopeptide repeat-containing protein At3g585902.1e-0458.97Show/hide
Query:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
        + S+H H VEA+K+I ++PFP  + LWR FLEGCKR RT
Subjt:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
A0A5A7UHJ9 Pentatricopeptide repeat-containing protein2.1e-0458.97Show/hide
Query:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
        + S+H H VEA+K+I ++PFP  + LWR FLEGCKR RT
Subjt:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
A0A6J1C0G3 pentatricopeptide repeat-containing protein At3g58590-like2.5e-0564.1Show/hide
Query:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
        + S+H H    +KLIVT+PFP  +FLWRSFLEGCKR RT
Subjt:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
A0A6J1G5W7 pentatricopeptide repeat-containing protein At3g585906.2e-0458.97Show/hide
Query:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
        + S H + VEA+K+I ++PFP  + LWRSFLEGCKR RT
Subjt:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
A0A6J1I2K3 pentatricopeptide repeat-containing protein At3g585906.2e-0458.97Show/hide
Query:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
        + S H + VEA+K+I ++PFP  + LWRSFLEGCKR RT
Subjt:  VFSTHRHTVEAKKLIVTLPFP--SFLWRSFLEGCKRPRT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTTTTCTACACATAGACATACTGTAGAAGCGAAGAAGTTGATTGTAACCCTACCTTTTCCTTCTTTTCTATGGCGTAGCTTCTTGGAAGGCTGCAAAAGACCAAGGAC
C
mRNA sequenceShow/hide mRNA sequence
GTGTTTTCTACACATAGACATACTGTAGAAGCGAAGAAGTTGATTGTAACCCTACCTTTTCCTTCTTTTCTATGGCGTAGCTTCTTGGAAGGCTGCAAAAGACCAAGGAC
C
Protein sequenceShow/hide protein sequence
VFSTHRHTVEAKKLIVTLPFPSFLWRSFLEGCKRPRT