; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010054 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010054
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTranscription initiation factor IIF subunit beta
Genome locationscaffold779:251426..256532
RNA-Seq ExpressionMS010054
SyntenyMS010054
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0005674 - transcription factor TFIIF complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR003196 - Transcription initiation factor IIF, beta subunit
IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040450 - TFIIF beta subunit, HTH domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143805.1 general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus]1.6e-13293.1Show/hide
Query:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF
        TNNNS+   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+LRSYSLNMSTDFIPMSVF
Subjt:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF

Query:  SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF
        SES  GKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGSETKRLRKERGELEKIIF
Subjt:  SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF

Query:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        +LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+ES ++TK R
Subjt:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_008465664.1 PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo]8.8e-13191.39Show/hide
Query:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF
        TNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+LRSY+LNMSTDFIPMSVF
Subjt:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF

Query:  SESPP------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGE
        SES        GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGSETKRLRKERGE
Subjt:  SESPP------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGE

Query:  LEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        LEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  LEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]9.4e-13393.49Show/hide
Query:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF
        TNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+LRSY+LNMSTDFIPMSVF
Subjt:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF

Query:  SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF
        SES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGSETKRLRKERGELEKIIF
Subjt:  SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF

Query:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        +LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_022133483.1 general transcription factor IIF subunit 2-like [Momordica charantia]3.4e-14399.62Show/hide
Query:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF
        TNNNSV+GTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF
Subjt:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF

Query:  SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF
        SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF
Subjt:  SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF

Query:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
Subjt:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_038889594.1 general transcription factor IIF subunit 2-like [Benincasa hispida]1.9e-13395.74Show/hide
Query:  NNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFS
        NNNSV   GTDFLETNKADRAMWLLKCPQ VTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGN+LRSYSLNMSTDFIPMSVFS
Subjt:  NNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFS

Query:  ESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR
        ES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGSETKRLRKERGELEKIIFR
Subjt:  ESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR

Query:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK
        LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESG+E K
Subjt:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK

TrEMBL top hitse value%identityAlignment
A0A1S3CPB8 Transcription initiation factor IIF subunit beta4.5e-13393.49Show/hide
Query:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF
        TNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+LRSY+LNMSTDFIPMSVF
Subjt:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF

Query:  SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF
        SES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGSETKRLRKERGELEKIIF
Subjt:  SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF

Query:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        +LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A1S3CPE2 Transcription initiation factor IIF subunit beta4.2e-13191.39Show/hide
Query:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF
        TNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+LRSY+LNMSTDFIPMSVF
Subjt:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF

Query:  SESPP------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGE
        SES        GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGSETKRLRKERGE
Subjt:  SESPP------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGE

Query:  LEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        LEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  LEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A6J1BZ89 Transcription initiation factor IIF subunit beta1.7e-14399.62Show/hide
Query:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF
        TNNNSV+GTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF
Subjt:  TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVF

Query:  SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF
        SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF
Subjt:  SESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF

Query:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
Subjt:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A6J1HK34 Transcription initiation factor IIF subunit beta1.4e-12991.54Show/hide
Query:  NNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFS
        ++NS    GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG +LR+YSLNMSTDFIPMSVFS
Subjt:  NNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFS

Query:  ESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR
        ES  GKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGSE KRLRKERGELEKIIFR
Subjt:  ESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR

Query:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ +ETK R
Subjt:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta3.0e-12991.54Show/hide
Query:  NNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFS
        ++NS    GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG +LR+YSLNMSTDFIPMSVFS
Subjt:  NNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFS

Query:  ESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR
        ES  GKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGSE KRLRKERGELEKIIFR
Subjt:  ESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFR

Query:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ +ETK R
Subjt:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

SwissProt top hitse value%identityAlignment
P13984 General transcription factor IIF subunit 24.8e-1532.32Show/hide
Query:  MSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELE
        ++VF+ES   K ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+           +KK+      + KR R ++  + 
Subjt:  MSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELE

Query:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
         ++F  FE+  Y+  K L+  T QP  Y+KEILK++ V N KG+H+ T+ELKPEY+    E KS
Subjt:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

P41900 General transcription factor IIF subunit 27.4e-1628.96Show/hide
Query:  LETNKADRAMWLLKCPQAVT----RALSNSPDGPSR------PVAKVIVSVDP-LQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSE
        L+ + A R +WL+K P+ +     +A +N   G  R        A+V +S+ P + + D ++   TE  ++++   +  +L  +S    +D    S  S 
Subjt:  LETNKADRAMWLLKCPQAVT----RALSNSPDGPSR------PVAKVIVSVDP-LQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSE

Query:  SPPG--KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF
        + P   K  +EG+I+ K + +P   N   Y KL  E   K+    R++Q ID +   + +P+      +    E+KK     +E K+ R ++  +  ++F
Subjt:  SPPG--KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF

Query:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK
          FE+  Y+  K L++ T+QP  Y+KEILKD+C YN K  H+  +ELK EY+    E K
Subjt:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK

Q01750 General transcription factor IIF subunit 26.3e-1527.67Show/hide
Query:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA   D G    S S      F+        ++VF+ES   K
Subjt:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK

Query:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP
         ++EG ++ + + +P     E Y KL R +  +S    R  Q  D V   + +P+           +KK+      + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E KS
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

Q2T9L9 General transcription factor IIF subunit 21.1e-1427.27Show/hide
Query:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA   D G    S S      F+        ++VF+ES   K
Subjt:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK

Query:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP
         ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+           +KK+      + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
        Y+  K L+  T QP  Y+K+ILK++ V N KG+H+ T+ELKPEY+    E KS
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

Q8R0A0 General transcription factor IIF subunit 21.8e-1427.67Show/hide
Query:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK
        K +  +WL+K P+ +++  +          A     V  L+   +   +   FT+  +LA   D G    S S      F+        ++VF+ES   K
Subjt:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK

Query:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP
         ++EG ++ + + +P     E Y KL R +  +S    R  Q +D V   + +P+           +KK+      + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E KS
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

Arabidopsis top hitse value%identityAlignment
AT1G75510.1 Transcription initiation factor IIF, beta subunit4.4e-6451.17Show/hide
Query:  LETNKADRAMWLLKCPQAVTRALSN----------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSES
        L+  K+DR++WL+KCP  V +A             S D P   +AK++  VDPL+     D S  EF M + G + GN  + Y+LNM TDF+PM  FS+ 
Subjt:  LETNKADRAMWLLKCPQAVTRALSN----------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSES

Query:  PPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVTSFGAAEKKKVVS-KGSETKRLRKERGELEKIIFR
          G    EGK+ +KFDMKP+ + +E Y +LCRERT K+M K+RQIQVID+  G HMRPMPGM  + S  + EK+K    K +E KR R++RGELE I+F+
Subjt:  PPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVTSFGAAEKKKVVS-KGSETKRLRKERGELEKIIFR

Query:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE
        LFE QP WT KQL+QETDQP Q++KEIL +LCVYN +G +QGTYELKPEYK+S ++
Subjt:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE

AT3G52270.1 Transcription initiation factor IIF, beta subunit1.9e-7557.94Show/hide
Query:  LETNKADRAMWLLKCPQAVTRALSN--------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSESPP
        LET  A+R+M L+K P  V  +L +         PD P RP AKVI+ VDPL   D+     T+F MELA  DSGN  R Y+L+MS DFIPM+VF ES  
Subjt:  LETNKADRAMWLLKCPQAVTRALSN--------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSESPP

Query:  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFER
        GK +VEGKI NKFDM+PH++N+E YG+LCRERT+K M K+RQIQVID+  G HMRPMPGM + +  A EKKK+ ++ SE KR R++R E+E+++F LFER
Subjt:  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFER

Query:  QPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE
        Q  WT + LIQETDQPEQ++K++LKDLC+YNNKG +QGTYELKPEYK++  E
Subjt:  QPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACCAATAACAACTCCGTCGCCGGAACCGGAACCGACTTCTTGGAGACCAACAAGGCCGACAGAGCAATGTGGCTCTTGAAATGCCCCCAGGCCGTTACTCGCGCCCTTTC
TAATTCGCCGGATGGCCCTTCTCGTCCGGTCGCCAAGGTCATCGTCTCCGTCGACCCTCTGCAATCCAATGACGACGACGATTCTTCATCTACTGAGTTCACTATGGAAT
TGGCTGGCACTGATTCTGGAAATTCGTTAAGGTCCTACTCATTGAATATGTCTACAGACTTCATTCCAATGTCGGTATTTTCCGAGTCACCACCAGGGAAGTTTACAGTT
GAAGGGAAAATACTGAACAAATTTGACATGAAGCCCCATGATCAAAATCTTGAGAGGTATGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACA
GATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGATGTGACGTCTTTTGGAGCTGCAGAGAAGAAGAAAGTGGTGAGCAAGGGATCGG
AAACAAAGAGGTTGAGAAAGGAGCGTGGCGAATTGGAGAAGATTATTTTTAGGCTCTTTGAAAGACAACCATATTGGACGTCGAAACAATTGATTCAAGAGACTGACCAA
CCTGAACAATATATGAAAGAAATACTTAAAGACCTTTGTGTCTACAACAACAAAGGTGTTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAGTCGGGTGATGA
AACGAAATCGCGG
mRNA sequenceShow/hide mRNA sequence
ACCAATAACAACTCCGTCGCCGGAACCGGAACCGACTTCTTGGAGACCAACAAGGCCGACAGAGCAATGTGGCTCTTGAAATGCCCCCAGGCCGTTACTCGCGCCCTTTC
TAATTCGCCGGATGGCCCTTCTCGTCCGGTCGCCAAGGTCATCGTCTCCGTCGACCCTCTGCAATCCAATGACGACGACGATTCTTCATCTACTGAGTTCACTATGGAAT
TGGCTGGCACTGATTCTGGAAATTCGTTAAGGTCCTACTCATTGAATATGTCTACAGACTTCATTCCAATGTCGGTATTTTCCGAGTCACCACCAGGGAAGTTTACAGTT
GAAGGGAAAATACTGAACAAATTTGACATGAAGCCCCATGATCAAAATCTTGAGAGGTATGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACA
GATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGATGTGACGTCTTTTGGAGCTGCAGAGAAGAAGAAAGTGGTGAGCAAGGGATCGG
AAACAAAGAGGTTGAGAAAGGAGCGTGGCGAATTGGAGAAGATTATTTTTAGGCTCTTTGAAAGACAACCATATTGGACGTCGAAACAATTGATTCAAGAGACTGACCAA
CCTGAACAATATATGAAAGAAATACTTAAAGACCTTTGTGTCTACAACAACAAAGGTGTTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAGTCGGGTGATGA
AACGAAATCGCGG
Protein sequenceShow/hide protein sequence
TNNNSVAGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSESPPGKFTV
EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQ
PEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR