CuGenDBv2

Gene ID	MS010075
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome b6
Genome location	scaffold779:405578..405751
RNA-Seq Expression	MS010075
Synteny	MS010075
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0022904 - respiratory electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR005797 - Cytochrome b/b6, N-terminal IPR016174 - Di-haem cytochrome, transmembrane IPR023530 - Cytochrome b6, PetB IPR027387 - Cytochrome b/b6-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AND49624.1 apocytochrome b6 of cytochrome b6/f complex [Sphagnum subnitens]

1.0e-18

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

QFQ49845.1 cytochrome b6 [Driessenia phasmolacuna]

1.0e-18

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

QWL16352.1 cytochrome b6 [Plantago elongata]

1.0e-18

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

QXP99840.1 cytochrome b6 [Fallopia aubertii]

1.0e-18

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

YP_009650396.1 cytochrome b6 [Vaccinium oldhamii]

1.0e-18

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

TrEMBL top hits

e value

%identity

Alignment

A0A0A6Z867 Cytochrome b6

4.8e-19

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

A0A291IC17 Cytochrome b6

4.8e-19

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

A0A5P8GBC4 Cytochrome b6

4.8e-19

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

A0A7H0R1F0 Cytochrome b6

4.8e-19

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

K9LMA2 Cytochrome b6

4.8e-19

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

SwissProt top hits

e value

%identity

Alignment

Q0P3P0 Cytochrome b6

1.3e-21

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

Q5SD23 Cytochrome b6

1.3e-21

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

Q70XX8 Cytochrome b6

1.3e-21

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

Q85A24 Cytochrome b6

1.3e-21

87.93

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

Q8M9Z4 Cytochrome b6

1.7e-21

86.21

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTEVNFGWLIRSVH WSASMMVLMMILH+FR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

Arabidopsis top hits

e value

%identity

Alignment

AT2G07727.1 Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal

1.5e-04

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFR
        +  +Y   +  AF SV++IM +V  GWL+R +H   ASM ++++ LH+FR
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFR

ATCG00720.1 photosynthetic electron transfer B

2.7e-22

86.21

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK
        MTFYYR  +TEAFASVQYIMTE NFGWLIRSVH WSASMMVLMMILHVFR+YL G FK
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

ATMG00220.1 apocytochrome b

1.5e-04

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Query:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFR
        +  +Y   +  AF SV++IM +V  GWL+R +H   ASM ++++ LH+FR
Subjt:  MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFR

Sequences

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CDS sequence

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ATGACTTTTTACTATCGTCTGATCATTACTGAGGCTTTTGCTTCTGTTCAATATATAATGACAGAAGTTAACTTTGGTTGGTTAATCCGATCAGTTCATGGATGGTCGGC
AAGTATGATGGTCTTAATGATGATTCTACACGTATTTCGCATGTATCTTATTGGTGACTTTAAG

mRNA sequence

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ATGACTTTTTACTATCGTCTGATCATTACTGAGGCTTTTGCTTCTGTTCAATATATAATGACAGAAGTTAACTTTGGTTGGTTAATCCGATCAGTTCATGGATGGTCGGC
AAGTATGATGGTCTTAATGATGATTCTACACGTATTTCGCATGTATCTTATTGGTGACTTTAAG

Protein sequence

Show/hide protein sequence

MTFYYRLIITEAFASVQYIMTEVNFGWLIRSVHGWSASMMVLMMILHVFRMYLIGDFK

MS010075 (gene) of Bitter gourd (TR) v1 genome