; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010096 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010096
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich RNA-binding protein RZ1C-like
Genome locationscaffold779:615791..617106
RNA-Seq ExpressionMS010096
SyntenyMS010096
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR001878 - Zinc finger, CCHC-type
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602289.1 Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia]2.2e-4849.79Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T+++++R   R RG+GFITFA+ RGMD+AIREM+G EF + II+V+KA +P++ G+  EP F  G
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR
                                     GYSSGGR SF RGG RS   D C+ CG  GHWARDCP A    GR R SFSSRS F+ D   + FG DRDR
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR

Query:  YVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY
        YVD++YDGGRD  R     R D + DKYG  + +  DRY
Subjt:  YVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY

XP_022133674.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Momordica charantia]7.9e-5998.23Show/hide
Query:  MEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQ
        MEGEDIGPEIERGY SGGRDSF RGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQ
Subjt:  MEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQ

Query:  DKYGCYNYHHSDR
        DKYGCYNYHHSDR
Subjt:  DKYGCYNYHHSDR

XP_022961758.1 glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata]2.2e-4849.79Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T+++++R   R RG+GFITFA+ RGMD+AIREM+G EF + II+V+KA +P++ G+  EP F  G
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR
                                     GYSSGGR SF RGG RS   D C+ CG  GHWARDCP A    GR R SFSSRS F+ D   + FG DRDR
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR

Query:  YVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY
        YVD++YDGGRD  R     R D + DKYG  + +  DRY
Subjt:  YVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY

XP_022990423.1 glycine-rich RNA-binding protein RZ1C [Cucurbita maxima]2.2e-4849.79Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T+++++R   R RG+GFITFA+ RGMD+AIREM+G EF + II+V+KA +P++ G+  EP F  G
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR
                                     GYSSGGR SF RGG RS   D C+ CG  GHWARDCP A    GR R SFSSRS F+ D   + FG DRDR
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR

Query:  YVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY
        YVD++YDGGRD  R     R D + DKYG  + +  DRY
Subjt:  YVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY

XP_038885252.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida]5.7e-4949.36Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        MA K+E+ ++VGGLSW ISER+L++AF+RFG+I++T+++++R   R RG+GFITFA+ RGMD+AIREM+GQEF + II+V+KA +P++ G+  EP F  G
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDRY
                                     GYSSGGR SF RG RS   D C+ CG  GHWARDCP      GR R SFSSRS F+ D   + FG DRDRY
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDRY

Query:  VDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY
        VD++Y+GGR   RD R D + DKYG  + +  DRY
Subjt:  VDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY

TrEMBL top hitse value%identityAlignment
A0A0A0LQB5 Uncharacterized protein5.3e-4547.88Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        MA K+E+ ++VGGLSW ISER+L++AF RFG++++T+++++R   R RG+GFITFA+ RGMD+AIREM+GQE  + II+V+KA +P++ G+  E  F  G
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRG-GRSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR
                                     GYSSGGR SF RG  RS   D C+ CG  GHWARDCP      G  R SFSSRS F+ D   + FG DRDR
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRG-GRSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR

Query:  YVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY
        YVDE+Y+GGR   RD R D + DKYG  + +  DRY
Subjt:  YVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY

A0A6J1BW89 glycine-rich RNA-binding protein RZ1C-like isoform X12.0e-4748.73Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        MA K+E+ ++VGGLSW ISER+L++AFSR+G+I++T+++++R   R RG+GFITFA+ RGMD+AIREM+G+E  +  I+V+KA +P++ G+  EP F  G
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR
                                     GYSSGGR SF RGG RS   D C+ CG  GHWARDCP      GR R SFSSRS F+ D   + FG DRDR
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR

Query:  YVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY
        YVD++YDGGR   RDH  D + DKYG  + +  DRY
Subjt:  YVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY

A0A6J1BWP1 zinc finger BED domain-containing protein RICESLEEPER 2-like3.8e-5998.23Show/hide
Query:  MEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQ
        MEGEDIGPEIERGY SGGRDSF RGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQ
Subjt:  MEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQ

Query:  DKYGCYNYHHSDR
        DKYGCYNYHHSDR
Subjt:  DKYGCYNYHHSDR

A0A6J1HB93 glycine-rich RNA-binding protein RZ1C-like1.0e-4849.79Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T+++++R   R RG+GFITFA+ RGMD+AIREM+G EF + II+V+KA +P++ G+  EP F  G
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR
                                     GYSSGGR SF RGG RS   D C+ CG  GHWARDCP A    GR R SFSSRS F+ D   + FG DRDR
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR

Query:  YVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY
        YVD++YDGGRD  R     R D + DKYG  + +  DRY
Subjt:  YVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY

A0A6J1JS04 glycine-rich RNA-binding protein RZ1C1.0e-4849.79Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T+++++R   R RG+GFITFA+ RGMD+AIREM+G EF + II+V+KA +P++ G+  EP F  G
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR
                                     GYSSGGR SF RGG RS   D C+ CG  GHWARDCP A    GR R SFSSRS F+ D   + FG DRDR
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSSRSWFERDDSENSFGEDRDR

Query:  YVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY
        YVD++YDGGRD  R     R D + DKYG  + +  DRY
Subjt:  YVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY

SwissProt top hitse value%identityAlignment
O22703 Glycine-rich RNA-binding protein RZ1B2.1e-2233.33Show/hide
Query:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGG
        E  ++VGGLSW ++ER+L+  F R+G+I + ++++ R   R RG+GFITF + RG D+AI+ M+G+E    +I+V+KA +P++ GE V            
Subjt:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGG

Query:  RDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGR
         D L++                  GYSS G+            D C+ C   GHWARDCP  G  R  F  R               RDRY D   +  R
Subjt:  RDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGR

Query:  DRVR--DHRLDNKQDKYGCYNYHHSDRY
        +R R  D  +D ++D+ G   Y + DR+
Subjt:  DRVR--DHRLDNKQDKYGCYNYHHSDRY

P49310 Glycine-rich RNA-binding protein GRP1A2.3e-1637.68Show/hide
Query:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGG
        E+  +VGGL+W   +R L+ AFS++G ++D+++I DR   R RG+GF+TF + + M +AI  MNGQ+ D   ITV++A+     G         GY SGG
Subjt:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGG

Query:  RDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG
                 G    G       E GYS GG     RGG
Subjt:  RDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG

Q03251 Glycine-rich RNA-binding protein 81.1e-1536.13Show/hide
Query:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQ-----------------PEI
        E+  +VGGL+W  ++ +LQ  FS+FG +ID+++I DR   R RG+GF+TF + + M +AI EMNG+E D  +ITV++A+                     
Subjt:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQ-----------------PEI

Query:  RGEYVEPCFSRGYLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG
         G         GY  GG     R S G    G   G    RGY  GGR   R GG
Subjt:  RGEYVEPCFSRGYLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG

Q8RWN5 Glycine-rich RNA-binding protein RZ1C4.0e-2937.96Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        MA KE   ++VGGLS  +++R+L+ AFSRFG I+D +++++R   R RG+GFITFA+ R MD +IREM+G++F   +I+V++A +P++  +  E   SR 
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRS---AVHDVCYNCGCLGHWARDCPLAGRRR----PSFSSR--SWFERDDSENSFGE
           GGRDS                     GYS  G+ SF  GG        D C+ CG +GHWARDCP AG  R      FSSR  ++   D   + + +
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRS---AVHDVCYNCGCLGHWARDCPLAGRRR----PSFSSR--SWFERDDSENSFGE

Query:  -----DRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY
             DR+RY+D++YDG        R D++ + Y   + + SDRY
Subjt:  -----DRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY

Q9LIN3 Glycine-rich RNA-binding protein RZ1A4.7e-2234.05Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDRFH-RCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        M+   E+  ++GGL+W  S+R L+DAF ++G +++ +V++D+F  R RG+GFITF   + MD AI  MNG + D   ITV KA QP   G          
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDRFH-RCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQ
            GRD     + G +  G D G + +R   SGG     RGG       C+ CG  GH+AR+CP    R         F   D   S  +DR    D++
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQ

Query:  YDGGRDR--VRDHRLDNKQDKYGCYNYHHSDR
        Y    DR   +D R  +K D+Y   +  +  R
Subjt:  YDGGRDR--VRDHRLDNKQDKYGCYNYHHSDR

Arabidopsis top hitse value%identityAlignment
AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain1.5e-2333.33Show/hide
Query:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGG
        E  ++VGGLSW ++ER+L+  F R+G+I + ++++ R   R RG+GFITF + RG D+AI+ M+G+E    +I+V+KA +P++ GE V            
Subjt:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGG

Query:  RDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGR
         D L++                  GYSS G+            D C+ C   GHWARDCP  G  R  F  R               RDRY D   +  R
Subjt:  RDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGR

Query:  DRVR--DHRLDNKQDKYGCYNYHHSDRY
        +R R  D  +D ++D+ G   Y + DR+
Subjt:  DRVR--DHRLDNKQDKYGCYNYHHSDRY

AT1G60650.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain1.5e-2333.33Show/hide
Query:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGG
        E  ++VGGLSW ++ER+L+  F R+G+I + ++++ R   R RG+GFITF + RG D+AI+ M+G+E    +I+V+KA +P++ GE V            
Subjt:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGG

Query:  RDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGR
         D L++                  GYSS G+            D C+ C   GHWARDCP  G  R  F  R               RDRY D   +  R
Subjt:  RDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGR

Query:  DRVR--DHRLDNKQDKYGCYNYHHSDRY
        +R R  D  +D ++D+ G   Y + DR+
Subjt:  DRVR--DHRLDNKQDKYGCYNYHHSDRY

AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain3.3e-2334.05Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDRFH-RCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        M+   E+  ++GGL+W  S+R L+DAF ++G +++ +V++D+F  R RG+GFITF   + MD AI  MNG + D   ITV KA QP   G          
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDRFH-RCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQ
            GRD     + G +  G D G + +R   SGG     RGG       C+ CG  GH+AR+CP    R         F   D   S  +DR    D++
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQ

Query:  YDGGRDR--VRDHRLDNKQDKYGCYNYHHSDR
        Y    DR   +D R  +K D+Y   +  +  R
Subjt:  YDGGRDR--VRDHRLDNKQDKYGCYNYHHSDR

AT4G39260.2 cold, circadian rhythm, and RNA binding 12.7e-1739.13Show/hide
Query:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGG
        E+  +VGGL+W  ++ +LQ  FS+FG +ID+++I DR   R RG+GF+TF + + M +AI EMNG+E D  +ITV++A+             SRG  SGG
Subjt:  EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGG

Query:  RDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG
            R  S G    G         GYS GG   +  GG
Subjt:  RDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG

AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain2.8e-3037.96Show/hide
Query:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG
        MA KE   ++VGGLS  +++R+L+ AFSRFG I+D +++++R   R RG+GFITFA+ R MD +IREM+G++F   +I+V++A +P++  +  E   SR 
Subjt:  MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRG

Query:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRS---AVHDVCYNCGCLGHWARDCPLAGRRR----PSFSSR--SWFERDDSENSFGE
           GGRDS                     GYS  G+ SF  GG        D C+ CG +GHWARDCP AG  R      FSSR  ++   D   + + +
Subjt:  YLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRS---AVHDVCYNCGCLGHWARDCPLAGRRR----PSFSSR--SWFERDDSENSFGE

Query:  -----DRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY
             DR+RY+D++YDG        R D++ + Y   + + SDRY
Subjt:  -----DRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCG
GGTCATTATAGACAGATTTCATCGTTGTCGTGGATATGGATTTATTACCTTTGCAAATCATCGAGGGATGGATAATGCAATCAGGGAAATGAATGGGCAGGAATTTGACC
AGGGGATTATCACAGTGTCTAAGGCTAAACAACCCGAAATAAGGGGAGAATATGTAGAACCATGCTTTAGCAGAGGCTACTTATCTGGTGGTCGGGATAGCTTGAGGAGA
GCTAGTTCTGGGCTAAAAATGGAGGGAGAAGATATAGGGCCAGAGATTGAGAGAGGTTACTCATCTGGTGGTCGGGATAGCTTTAGGAGAGGAGGTAGATCTGCGGTGCA
TGATGTATGCTATAATTGTGGATGCTTGGGGCATTGGGCACGTGATTGTCCTTTAGCTGGAAGGCGTAGACCCTCATTTTCATCTCGTTCTTGGTTTGAAAGGGATGACA
GTGAGAATTCTTTTGGGGAAGACCGTGATCGATATGTGGACGAGCAATATGATGGAGGACGAGATAGAGTTAGGGATCATCGTCTAGATAATAAACAGGACAAGTATGGA
TGCTACAACTACCATCATAGCGACAGGTAT
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCG
GGTCATTATAGACAGATTTCATCGTTGTCGTGGATATGGATTTATTACCTTTGCAAATCATCGAGGGATGGATAATGCAATCAGGGAAATGAATGGGCAGGAATTTGACC
AGGGGATTATCACAGTGTCTAAGGCTAAACAACCCGAAATAAGGGGAGAATATGTAGAACCATGCTTTAGCAGAGGCTACTTATCTGGTGGTCGGGATAGCTTGAGGAGA
GCTAGTTCTGGGCTAAAAATGGAGGGAGAAGATATAGGGCCAGAGATTGAGAGAGGTTACTCATCTGGTGGTCGGGATAGCTTTAGGAGAGGAGGTAGATCTGCGGTGCA
TGATGTATGCTATAATTGTGGATGCTTGGGGCATTGGGCACGTGATTGTCCTTTAGCTGGAAGGCGTAGACCCTCATTTTCATCTCGTTCTTGGTTTGAAAGGGATGACA
GTGAGAATTCTTTTGGGGAAGACCGTGATCGATATGTGGACGAGCAATATGATGGAGGACGAGATAGAGTTAGGGATCATCGTCTAGATAATAAACAGGACAAGTATGGA
TGCTACAACTACCATCATAGCGACAGGTAT
Protein sequenceShow/hide protein sequence
MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDRFHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRR
ASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYG
CYNYHHSDRY