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MS010155 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010155
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationscaffold391:288119..288424
RNA-Seq ExpressionMS010155
SyntenyMS010155
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647369.1 hypothetical protein Csa_004264 [Cucumis sativus]8.7e-2666.67Show/hide
Query:  NGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG----------HQQKHRHQHRHRHEHQNQH-RRHHHHQHHHQ
        N WRSVPEFGGWDHNAPGASNYSVVFTQARA+RKQQKTDLTEFK++SLGNE+ELM A            H+ +HRH H H H+H + H  +HHHHQHHHQ
Subjt:  NGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG----------HQQKHRHQHRHRHEHQNQH-RRHHHHQHHHQ

Query:  A-AADDSI
        +   DDS+
Subjt:  A-AADDSI

XP_022152996.1 lateral signaling target protein 2 homolog [Momordica charantia]1.6e-4398.97Show/hide
Query:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI
        +NGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI
Subjt:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI

XP_023512838.1 dendritic arbor reduction protein 1 isoform X2 [Cucurbita pepo subsp. pepo]1.4e-2367.01Show/hide
Query:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI
        +N W+SVPEFGGWD+N P ASNYSVVF++ARAN+KQQKTDLTEFKR+SLGNE+ELMA A    +H HQHRHRHEH++QH    HH HH Q   D ++
Subjt:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI

XP_038901151.1 lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida]1.1e-2873.79Show/hide
Query:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG----HQQKHRHQHRHRHE--HQNQHRRHHHHQHHHQAAAD
        +N WRSVPEFGGWDHNAPGASNYSVVFTQARA+RKQ+KTDLTEFKR+SLGNERELMAA G    HQ+ H H+H H HE  HQ+QH+  HHH H HQ  AD
Subjt:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG----HQQKHRHQHRHRHE--HQNQHRRHHHHQHHHQAAAD

Query:  DSI
        DS+
Subjt:  DSI

XP_038901152.1 lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida]1.1e-2873.79Show/hide
Query:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG----HQQKHRHQHRHRHE--HQNQHRRHHHHQHHHQAAAD
        +N WRSVPEFGGWDHNAPGASNYSVVFTQARA+RKQ+KTDLTEFKR+SLGNERELMAA G    HQ+ H H+H H HE  HQ+QH+  HHH H HQ  AD
Subjt:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG----HQQKHRHQHRHRHE--HQNQHRRHHHHQHHHQAAAD

Query:  DSI
        DS+
Subjt:  DSI

TrEMBL top hitse value%identityAlignment
A0A0A0KK09 AvrRpt-cleavage domain-containing protein4.2e-2666.67Show/hide
Query:  NGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG----------HQQKHRHQHRHRHEHQNQH-RRHHHHQHHHQ
        N WRSVPEFGGWDHNAPGASNYSVVFTQARA+RKQQKTDLTEFK++SLGNE+ELM A            H+ +HRH H H H+H + H  +HHHHQHHHQ
Subjt:  NGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG----------HQQKHRHQHRHRHEHQNQH-RRHHHHQHHHQ

Query:  A-AADDSI
        +   DDS+
Subjt:  A-AADDSI

A0A6J1DJD7 lateral signaling target protein 2 homolog7.6e-4498.97Show/hide
Query:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI
        +NGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI
Subjt:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI

A0A6J1FX29 dendritic arbor reduction protein 1 isoform X29.7e-2371.11Show/hide
Query:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQ
        +N W+SVPEFGGWD+N P ASNYSVVF++ARAN+KQQKTDLTEFKR+SLGNE+ELMA A    +H HQHRHRHEH+ QH    HH HH Q
Subjt:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQ

A0A6J1JCC4 dendritic arbor reduction protein 1 isoform X28.8e-2467.01Show/hide
Query:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI
        +N W+SVPEFGGWD+N P ASNYSVVF++ARAN+KQQKTDLTEFKR+SLGNE+ELMA A    +H HQH HR EH++QH  H HH HH Q  AD ++
Subjt:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI

A0A6J1JEB9 dendritic arbor reduction protein 1 isoform X18.8e-2467.01Show/hide
Query:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI
        +N W+SVPEFGGWD+N P ASNYSVVF++ARAN+KQQKTDLTEFKR+SLGNE+ELMA A    +H HQH HR EH++QH  H HH HH Q  AD ++
Subjt:  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein4.9e-1153.25Show/hide
Query:  WRSVPEFGGWDHNAPG-ASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAA--GHQQKHRHQHRHRHEHQN
        W  VP+FGGWD   P  A+NYSVVF++ARANRKQ K  +   + SSLG+E+ELM +    HQQ H     HRHE Q+
Subjt:  WRSVPEFGGWDHNAPG-ASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAA--GHQQKHRHQHRHRHEHQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTGCATATACAGAACGGGTGGAGATCAGTTCCAGAATTTGGGGGGTGGGATCACAATGCCCCAGGAGCAAGCAATTATTCTGTGGTGTTTACTCAAGCTCGTGC
CAACAGGAAACAGCAGAAGACTGACTTAACTGAGTTCAAAAGAAGCAGCCTAGGGAACGAAAGGGAGTTAATGGCGGCTGCAGGTCATCAACAAAAACATCGCCACCAAC
ACCGCCACCGCCATGAACATCAAAACCAACACCGCCGCCATCACCACCACCAACATCATCATCAAGCAGCAGCAGATGACTCTATT
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTGCATATACAGAACGGGTGGAGATCAGTTCCAGAATTTGGGGGGTGGGATCACAATGCCCCAGGAGCAAGCAATTATTCTGTGGTGTTTACTCAAGCTCGTGC
CAACAGGAAACAGCAGAAGACTGACTTAACTGAGTTCAAAAGAAGCAGCCTAGGGAACGAAAGGGAGTTAATGGCGGCTGCAGGTCATCAACAAAAACATCGCCACCAAC
ACCGCCACCGCCATGAACATCAAAACCAACACCGCCGCCATCACCACCACCAACATCATCATCAAGCAGCAGCAGATGACTCTATT
Protein sequenceShow/hide protein sequence
MLVHIQNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI