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MS010188 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010188
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationscaffold391:574691..575011
RNA-Seq ExpressionMS010188
SyntenyMS010188
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570402.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.3e-2775.89Show/hide
Query:  MASTAIAASFLPFTAKHPS---AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAP
        MAS +I ASFLPFTA  PS   AA RRAL V KA  SAAA D+ S  NLE+K +V+VES QGRRELVA AVTVAAAT AKAAMADEP RGSAEAKQKYAP
Subjt:  MASTAIAASFLPFTAKHPS---AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAP

Query:  VCVTMPTARICR
        +CVTMPTARICR
Subjt:  VCVTMPTARICR

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]1.7e-2777.57Show/hide
Query:  MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PSA  RRALIVAKAS  +N+ S  NLE+K +V+VES QGRRELVA AVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

XP_022148791.1 photosystem II 5 kDa protein, chloroplastic [Momordica charantia]3.3e-4497.2Show/hide
Query:  MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
        MASTAIAASFLP TAKHPSAATRRALIVAKASAAANDASKPNLEM RSVQVESWQGRRELVA AVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
Subjt:  MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP

Query:  TARICRN
        TARICRN
Subjt:  TARICRN

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]3.7e-2777.27Show/hide
Query:  MASTAIAASFLPFTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC
        MAS +I ASFLPFTA  PS AA RRAL V KA  SAAA D+ S  NLE+K +V+VES QGRRELVA AVTVAAAT AKAAMADEP RGSAEAKQKYAP+C
Subjt:  MASTAIAASFLPFTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC

Query:  VTMPTARICR
        VTMPTARICR
Subjt:  VTMPTARICR

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]1.7e-2776.64Show/hide
Query:  MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PS A RRAL+VAKAS  ++DAS  NLE+K +V+VE+ QGRRELVA AVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

TrEMBL top hitse value%identityAlignment
A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic8.0e-2877.57Show/hide
Query:  MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PSA  RRALIVAKAS  +N+ S  NLE+K +V+VES QGRRELVA AVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

A0A5A7TID9 Photosystem II 5 kDa protein8.0e-2877.57Show/hide
Query:  MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PSA  RRALIVAKAS  +N+ S  NLE+K +V+VES QGRRELVA AVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

A0A6J1D6G0 photosystem II 5 kDa protein, chloroplastic1.6e-4497.2Show/hide
Query:  MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
        MASTAIAASFLP TAKHPSAATRRALIVAKASAAANDASKPNLEM RSVQVESWQGRRELVA AVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
Subjt:  MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP

Query:  TARICRN
        TARICRN
Subjt:  TARICRN

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic1.8e-2777.27Show/hide
Query:  MASTAIAASFLPFTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC
        MAS +I ASFLPFTA  PS AA RRAL V KA  SAAA D+ S  NLE+K +V+VES QGRRELVA AVTVAAAT AKAAMADEP RGSAEAKQKYAP+C
Subjt:  MASTAIAASFLPFTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC

Query:  VTMPTARICR
        VTMPTARICR
Subjt:  VTMPTARICR

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic1.8e-2777.27Show/hide
Query:  MASTAIAASFLPFTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC
        MAS +I ASFLPFTA  PS AA RRAL V KA  SAAA D+ S  NLE+K +V+VES QGRRELVA AVTVAAAT AKAAMADEP RGSAEAKQKYAP+C
Subjt:  MASTAIAASFLPFTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC

Query:  VTMPTARICR
        VTMPTARICR
Subjt:  VTMPTARICR

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic1.2e-0945.54Show/hide
Query:  MASTAIAASFLPFTAKHPS---AATRRALIVAKA--SAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMAD-EPKRGSAEAKQKYAP
        MAS  + +SFL  +   P+   +A RR +++ KA      N     N E K S       GRREL       AA ++AK AMAD EPKRG+ EAK+KY+ 
Subjt:  MASTAIAASFLPFTAKHPS---AATRRALIVAKA--SAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMAD-EPKRGSAEAKQKYAP

Query:  VCVTMPTARICR
        VCVT PTARICR
Subjt:  VCVTMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic1.6e-1248.62Show/hide
Query:  MASTAIAASFLPFT--AKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVT
        MAS  +  SFL  T   K     T+R L+VA    AA  A   +++M    + E   GRRE++  A   A  ++A  A A EPKRGSAEAK+ YAPVCVT
Subjt:  MASTAIAASFLPFT--AKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVT

Query:  MPTARICRN
        MPTARICRN
Subjt:  MPTARICRN

Q39195 Photosystem II 5 kDa protein, chloroplastic1.9e-1350Show/hide
Query:  MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT
        MAS  + A+F P  AK PSA   R L V +AS + N    P+LE+K   +  S   RR+L+  A   A  +LAK AMA  +EPKRG+  AK+KYA VCVT
Subjt:  MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT

Query:  MPTARICR
        MPTA+ICR
Subjt:  MPTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein4.8e-1750.45Show/hide
Query:  MASTAIAASFLPFTAKHP---SAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMA-DEPKRGSAEAKQKYAPVC
        MAS  + +SFLP  +  P   S+ +RR+L V KAS + N  S  N + ++S+++     RR+LV  A   A  +LAK AMA DEPKRG+  AK+KYAPVC
Subjt:  MASTAIAASFLPFTAKHP---SAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMA-DEPKRGSAEAKQKYAPVC

Query:  VTMPTARICRN
        VTMPTA+ICRN
Subjt:  VTMPTARICRN

AT3G21055.1 photosystem II subunit T1.3e-1450Show/hide
Query:  MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT
        MAS  + A+F P  AK PSA   R L V +AS + N    P+LE+K   +  S   RR+L+  A   A  +LAK AMA  +EPKRG+  AK+KYA VCVT
Subjt:  MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT

Query:  MPTARICR
        MPTA+ICR
Subjt:  MPTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCACCGCAATCGCAGCCTCCTTCCTCCCCTTCACCGCCAAGCATCCCTCCGCCGCTACCCGGAGAGCCCTAATCGTGGCCAAGGCCTCCGCCGCCGCGAACGA
CGCGTCCAAGCCCAACTTGGAGATGAAGAGGAGTGTGCAGGTGGAGAGCTGGCAGGGGCGGCGGGAGTTGGTGGCGGTCGCCGTGACGGTGGCTGCGGCCACCTTGGCCA
AGGCGGCGATGGCGGACGAGCCGAAGCGCGGCAGCGCAGAAGCGAAACAGAAGTATGCTCCGGTGTGCGTCACAATGCCCACTGCGCGCATCTGTCGCAAC
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCACCGCAATCGCAGCCTCCTTCCTCCCCTTCACCGCCAAGCATCCCTCCGCCGCTACCCGGAGAGCCCTAATCGTGGCCAAGGCCTCCGCCGCCGCGAACGA
CGCGTCCAAGCCCAACTTGGAGATGAAGAGGAGTGTGCAGGTGGAGAGCTGGCAGGGGCGGCGGGAGTTGGTGGCGGTCGCCGTGACGGTGGCTGCGGCCACCTTGGCCA
AGGCGGCGATGGCGGACGAGCCGAAGCGCGGCAGCGCAGAAGCGAAACAGAAGTATGCTCCGGTGTGCGTCACAATGCCCACTGCGCGCATCTGTCGCAAC
Protein sequenceShow/hide protein sequence
MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICRN