; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010211 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010211
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationscaffold391:718846..719232
RNA-Seq ExpressionMS010211
SyntenyMS010211
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.1e-2044.09Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE
        KLNT+AAW A+   GG+GWI+R+EKGE+ KA  + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+    Q+ TEI+WL+++I    +
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE

Query:  RARLKRFQHVQRDGNSVAQEIANRAAD
           +   +H+ R+ N VA  +A RA +
Subjt:  RARLKRFQHVQRDGNSVAQEIANRAAD
XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]1.1e-6299.22Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE
        KLNTDAAWHANQGVGGLGWIIRNEK EIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE

Query:  RARLKRFQHVQRDGNSVAQEIANRAADGL
        RARLKRFQHVQRDGNSVAQEIANRAADGL
Subjt:  RARLKRFQHVQRDGNSVAQEIANRAADGL
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.8e-1252.56Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
        KLNTDAAW A+    G+GWI+R+EKGE+ K G + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.8e-1252.56Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
        KLNTDAAW A+    G+GWI+R+EKGE+ K G + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.4e-2042.96Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEA--------VVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLV
        KLNTDAAW A+   GG+GWI+R+EKGE+ KA  + I   R+ITYLE+MAI  G+ A        +       + +ES+SLEAIHL+    Q+ TEI+WL+
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEA--------VVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLV

Query:  QDIKNFGERARLKRFQHVQRDGNSVAQEIANRAAD
        ++I    E  ++   +H+ R+ N VA ++A RA +
Subjt:  QDIKNFGERARLKRFQHVQRDGNSVAQEIANRAAD
TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134125.2e-2144.09Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE
        KLNT+AAW A+   GG+GWI+R+EKGE+ KA  + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+    Q+ TEI+WL+++I    +
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE

Query:  RARLKRFQHVQRDGNSVAQEIANRAAD
           +   +H+ R+ N VA  +A RA +
Subjt:  RARLKRFQHVQRDGNSVAQEIANRAAD
A0A6J1D5W1 uncharacterized protein LOC1110173295.4e-6399.22Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE
        KLNTDAAWHANQGVGGLGWIIRNEK EIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE

Query:  RARLKRFQHVQRDGNSVAQEIANRAADGL
        RARLKRFQHVQRDGNSVAQEIANRAADGL
Subjt:  RARLKRFQHVQRDGNSVAQEIANRAADGL
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X18.8e-1352.56Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
        KLNTDAAW A+    G+GWI+R+EKGE+ K G + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X28.8e-1352.56Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
        KLNTDAAW A+    G+GWI+R+EKGE+ K G + I   R+ITYLE+MAI  G+ A+       + +ES+SLEAIHL+
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLI
A0A6J1DSV1 uncharacterized protein LOC1110236081.1e-2042.96Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEA--------VVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLV
        KLNTDAAW A+   GG+GWI+R+EKGE+ KA  + I   R+ITYLE+MAI  G+ A        +       + +ES+SLEAIHL+    Q+ TEI+WL+
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEA--------VVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLV

Query:  QDIKNFGERARLKRFQHVQRDGNSVAQEIANRAAD
        ++I    E  ++   +H+ R+ N VA ++A RA +
Subjt:  QDIKNFGERARLKRFQHVQRDGNSVAQEIANRAAD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.5e-0725.38Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILW-----LVQDI
        K NTDA W       G+GWI+RNE G +   G + +   +++   EL A+   +  +   +   +I ES++   ++L+       ++  W      ++DI
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILW-----LVQDI

Query:  KNFGERARLKRFQHVQRDGNSVAQEIANRA
        +         +F+   R GN VA  IA  +
Subjt:  KNFGERARLKRFQHVQRDGNSVAQEIANRA
AT4G29090.1 Ribonuclease H-like superfamily protein2.0e-0926.4Show/hide
Query:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE
        K NTDA W+ +    G+GW++RNEKGE+K  G + +   + +   EL A+   + ++       +I ES+S   I ++    +    +   +QD++    
Subjt:  KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGE

Query:  RARLKRFQHVQRDGNSVAQEIANRA
        +    +F  + R+GN++A+ +A  +
Subjt:  RARLKRFQHVQRDGNSVAQEIANRA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAACTAAACACTGATGCGGCTTGGCATGCGAACCAAGGGGTGGGAGGTCTCGGATGGATAATCAGGAACGAGAAGGGAGAAATTAAGAAAGCAGGAGGACAAACTATCAC
CGATGCGCGGGACATTACTTACTTGGAGTTAATGGCGATTTGGCTAGGGATTGAAGCGGTTGTGTCTTCTTCTTCGGTCTCGCTAATAATTGAATCGGAGTCATTGGAAG
CGATCCATCTTATTCAAGGAATCCAACAGAATGTGACTGAGATCTTGTGGCTGGTGCAGGATATCAAGAATTTTGGTGAGAGAGCACGATTGAAGAGATTCCAGCACGTC
CAAAGGGACGGAAATTCTGTTGCCCAAGAAATTGCAAATCGAGCGGCTGATGGTTTG
mRNA sequenceShow/hide mRNA sequence
AAACTAAACACTGATGCGGCTTGGCATGCGAACCAAGGGGTGGGAGGTCTCGGATGGATAATCAGGAACGAGAAGGGAGAAATTAAGAAAGCAGGAGGACAAACTATCAC
CGATGCGCGGGACATTACTTACTTGGAGTTAATGGCGATTTGGCTAGGGATTGAAGCGGTTGTGTCTTCTTCTTCGGTCTCGCTAATAATTGAATCGGAGTCATTGGAAG
CGATCCATCTTATTCAAGGAATCCAACAGAATGTGACTGAGATCTTGTGGCTGGTGCAGGATATCAAGAATTTTGGTGAGAGAGCACGATTGAAGAGATTCCAGCACGTC
CAAAGGGACGGAAATTCTGTTGCCCAAGAAATTGCAAATCGAGCGGCTGATGGTTTG
Protein sequenceShow/hide protein sequence
KLNTDAAWHANQGVGGLGWIIRNEKGEIKKAGGQTITDARDITYLELMAIWLGIEAVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGERARLKRFQHV
QRDGNSVAQEIANRAADGL