CuGenDBv2

Gene ID	MS010226
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	scaffold391:965813..965920
RNA-Seq Expression	MS010226
Synteny	MS010226
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009533 - chloroplast stromal thylakoid (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR036001 - Photosystem antenna protein-like superfamily IPR044900 - Photosystem II CP43 reaction centre protein superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

PHT54971.1 Photosystem II CP43 reaction center protein [Capsicum baccatum]

2.1e-06

80.56

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVG AQGPT L +YLMRSPIE+VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

PLY74058.1 hypothetical protein LSAT_2X34800 [Lactuca sativa]

6.0e-06

77.78

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVGFAQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

TYG57474.1 hypothetical protein ES288_D08G144400v1, partial [Gossypium darwinii]

6.0e-06

77.78

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQHL ANVG AQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

XP_038713518.1 photosystem II CP43 reaction center protein-like [Tripterygium wilfordii]

2.1e-06

80.56

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVG AQGPT L +YLMRSPIE+VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

XP_042755626.1 LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Lactuca sativa]

6.0e-06

77.78

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVGFAQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

TrEMBL top hits

e value

%identity

Alignment

A0A0D3M635 Photosystem II CP43 reaction center protein

2.9e-06

77.78

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQHL ANVG AQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

A0A2G2XC93 Photosystem II CP43 reaction center protein

1.0e-06

80.56

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVG AQGPT L +YLMRSPIE+VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

A0A2J6KG64 Uncharacterized protein

2.9e-06

77.78

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVGFAQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

A0A5D2BJ64 Uncharacterized protein (Fragment)

2.9e-06

77.78

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQHL ANVG AQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

A0A6S7MQI5 Uncharacterized protein

3.8e-06

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQHL ANVG AQGPT L +YLMRSP  ++IF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

SwissProt top hits

e value

%identity

Alignment

A1E9Z4 Photosystem II CP43 reaction center protein

6.7e-08

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVG AQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

A4QJB1 Photosystem II CP43 reaction center protein

6.7e-08

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVG AQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

A4QJJ5 Photosystem II CP43 reaction center protein

6.7e-08

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVG AQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

A9LYI1 Photosystem II CP43 reaction center protein

6.7e-08

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVG AQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

Q3V538 Photosystem II CP43 reaction center protein

6.7e-08

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVG AQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

4.7e-09

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Query:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF
        TFLVRDQ L ANVG AQGPT L +YLMRSP  +VIF
Subjt:  TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

Sequences

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CDS sequence

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ACTTTTCTAGTTAGAGACCAACATCTCAAAGCTAACGTTGGATTTGCTCAAGGACCTACTAGTTTACGTCAATATCTAATGCGTTCTCCGATTGAAAAAGTTATTTTT

mRNA sequence

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ACTTTTCTAGTTAGAGACCAACATCTCAAAGCTAACGTTGGATTTGCTCAAGGACCTACTAGTTTACGTCAATATCTAATGCGTTCTCCGATTGAAAAAGTTATTTTT

Protein sequence

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TFLVRDQHLKANVGFAQGPTSLRQYLMRSPIEKVIF

MS010226 (gene) of Bitter gourd (TR) v1 genome