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MS010233 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010233
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGATA transcription factor 29
Genome locationscaffold391:1001515..1002114
RNA-Seq ExpressionMS010233
SyntenyMS010233
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0030154 - cell differentiation (biological process)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000679 - Zinc finger, GATA-type
IPR013088 - Zinc finger, NHR/GATA-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022153837.1 GATA transcription factor 29 [Momordica charantia]4.6e-8898.22Show/hide
Query:  NQVAAVNNNVGLASCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGNGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSS
        +QVAAVNNNVGL SCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGNGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSS
Subjt:  NQVAAVNNNVGLASCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGNGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSS

Query:  GSRRKASRRRRVSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN
        GSRRKASR RRVSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN
Subjt:  GSRRKASRRRRVSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN

XP_022943672.1 GATA zinc finger domain-containing protein 8-like [Cucurbita moschata]5.8e-5168.6Show/hide
Query:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET
        VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N       GST N + N+PLQ  +ND YTLLNPA R TDDHE E 
Subjt:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET

Query:  SS-GSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH
        SS G RR+  +RRRVS  +E E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EAM AEN+H
Subjt:  SS-GSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH

XP_022985849.1 GATA zinc finger domain-containing protein 8-like [Cucurbita maxima]4.0e-5269.01Show/hide
Query:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET
        VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N       GST N+ AN+PLQ  +ND YTLLNPA R  DDHE E 
Subjt:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET

Query:  SSGSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH
        SSGSRR+  +RRRVS  +E E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EA+ AEN+H
Subjt:  SSGSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH

XP_023513295.1 putative GATA transcription factor 22 [Cucurbita pepo subsp. pepo]3.4e-5168.6Show/hide
Query:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET
        VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N       GST N++AN+PLQ  +ND YTLLNPA R TDDHE E 
Subjt:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET

Query:  SS-GSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH
        SS G RR+  +RRRVS  +E E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EA+ AEN+H
Subjt:  SS-GSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH

XP_023522473.1 GATA transcription factor 21-like [Cucurbita pepo subsp. pepo]3.4e-5168.6Show/hide
Query:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET
        VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N       GST N++AN+PLQ  +ND YTLLNPA R TDDHE E 
Subjt:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET

Query:  SS-GSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH
        SS G RR+  +RRRVS  +E E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EA+ AEN+H
Subjt:  SS-GSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH

TrEMBL top hitse value%identityAlignment
A0A0A0L0J0 GATA-type domain-containing protein1.4e-4564.41Show/hide
Query:  INQVAAVNNNVGLASCGG-MSEANY-NPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN---GSTTNNLANVPL--QTNSNDLYTLLNPASRSTD
        +NQV A  NN GL      MSE NY NP+QI+WSK+LKTYVLKSNN      H     N         ST NN  N+PL  + ++NDLYTLLNPASR  D
Subjt:  INQVAAVNNNVGLASCGG-MSEANY-NPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN---GSTTNNLANVPL--QTNSNDLYTLLNPASRSTD

Query:  DHEDETSSGSRRKASRRRRVS-HDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH
        DHE E SS  RRK SRRRRVS  ++ E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE MN+EAM AENS+
Subjt:  DHEDETSSGSRRKASRRRRVS-HDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH

A0A5A7TDI3 GATA transcription factor 29-like8.0e-4664.88Show/hide
Query:  NNVGLASCGG-MSEANYNPNQILWSKELKTYVLKSNNQTSL--GSHDQVKGNI-GIGNGSTTNNLANVPL--QTNSNDLYTLLNPASRSTDDHEDETSSG
        NN GLA     MSE NYNP+QI+WSK+LKTYVLKSNN   L   S+         I   +  N+  N+PL  + ++NDLYTLLNPASR +DDHE E SSG
Subjt:  NNVGLASCGG-MSEANYNPNQILWSKELKTYVLKSNNQTSL--GSHDQVKGNI-GIGNGSTTNNLANVPL--QTNSNDLYTLLNPASRSTDDHEDETSSG

Query:  SRRKASRRRRVS-HDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH
         RRK SRRRR S  ++ E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE MN+EAM AENS+
Subjt:  SRRKASRRRRVS-HDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH

A0A6J1DIM0 GATA transcription factor 292.2e-8898.22Show/hide
Query:  NQVAAVNNNVGLASCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGNGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSS
        +QVAAVNNNVGL SCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGNGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSS
Subjt:  NQVAAVNNNVGLASCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGNGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSS

Query:  GSRRKASRRRRVSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN
        GSRRKASR RRVSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN
Subjt:  GSRRKASRRRRVSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN

A0A6J1FTP0 GATA zinc finger domain-containing protein 8-like2.8e-5168.6Show/hide
Query:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET
        VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N       GST N + N+PLQ  +ND YTLLNPA R TDDHE E 
Subjt:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET

Query:  SS-GSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH
        SS G RR+  +RRRVS  +E E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EAM AEN+H
Subjt:  SS-GSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH

A0A6J1JEF0 GATA zinc finger domain-containing protein 8-like2.0e-5269.01Show/hide
Query:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET
        VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N       GST N+ AN+PLQ  +ND YTLLNPA R  DDHE E 
Subjt:  VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGN--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDET

Query:  SSGSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH
        SSGSRR+  +RRRVS  +E E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EA+ AEN+H
Subjt:  SSGSRRKASRRRRVSH-DEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH

SwissProt top hitse value%identityAlignment
B8AX51 GATA transcription factor 153.4e-0960.87Show/hide
Query:  EKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT
        ++RC   NC T  TP+WR GP GPKSLCNACGIRY+KE     A T
Subjt:  EKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT

Q6L5E5 GATA transcription factor 153.4e-0960.87Show/hide
Query:  EKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT
        ++RC   NC T  TP+WR GP GPKSLCNACGIRY+KE     A T
Subjt:  EKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT

Q6QPM2 GATA transcription factor 193.0e-1059.26Show/hide
Query:  HDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENS
        H+   +RC   NC+T  TP+WR GP GPKSLCNACGIR++KE   R A TA NS
Subjt:  HDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENS

Q8LC79 GATA transcription factor 187.5e-0960Show/hide
Query:  KRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT
        +RC   NC+T  TP+WR GP GPKSLCNACGIR++KE     A T
Subjt:  KRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT

Q9LT45 GATA transcription factor 298.0e-1141.86Show/hide
Query:  NDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRV--------SHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE
        +D Y L++  +R    +     + S ++ +  +R+           E  K+CTN NCN   TPMWR+GPLGPKSLCNACGI++RKE
Subjt:  NDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRV--------SHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE

Arabidopsis top hitse value%identityAlignment
AT2G18380.1 GATA transcription factor 201.7e-0837.37Show/hide
Query:  NVPLQTNSNDLYTLLNPASRSTDDHEDETSS-----------GSRRKASRRRR--VSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE
        N    T+ +   +L  P++R  D H   +++           G   K S  ++  V+H  P +RC   +C+T  TP+WR GP GPKSLCNACGIR++KE
Subjt:  NVPLQTNSNDLYTLLNPASRSTDDHEDETSS-----------GSRRKASRRRR--VSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE

AT3G20750.1 GATA transcription factor 295.7e-1241.86Show/hide
Query:  NDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRV--------SHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE
        +D Y L++  +R    +     + S ++ +  +R+           E  K+CTN NCN   TPMWR+GPLGPKSLCNACGI++RKE
Subjt:  NDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRV--------SHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE

AT3G50870.1 GATA type zinc finger transcription factor family protein5.3e-1060Show/hide
Query:  KRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT
        +RC   NC+T  TP+WR GP GPKSLCNACGIR++KE     A T
Subjt:  KRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT

AT4G26150.1 cytokinin-responsive gata factor 11.7e-0844.78Show/hide
Query:  SRSTDDHEDETSSGSRRKASRRRRVSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRK
        S S+  H +   S +   + R+   ++D   + C+  +CNT  TP+WR GP GPKSLCNACGIR RK
Subjt:  SRSTDDHEDETSSGSRRKASRRRRVSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRK

AT4G36620.1 GATA transcription factor 192.2e-1159.26Show/hide
Query:  HDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENS
        H+   +RC   NC+T  TP+WR GP GPKSLCNACGIR++KE   R A TA NS
Subjt:  HDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAATCAGGTGGCCGCGGTGAACAATAATGTTGGGTTGGCGTCGTGCGGTGGGATGAGTGAAGCAAATTACAACCCTAACCAAATTTTATGGTCAAAAGAGCTGAAAAC
CTACGTTCTTAAGTCAAATAATCAAACTTCATTGGGTAGTCATGATCAAGTGAAGGGCAATATTGGCATTGGAAATGGCAGCACTACAAATAACTTGGCCAATGTTCCTC
TTCAAACCAACAGCAACGACCTCTACACACTCCTCAACCCCGCTTCAAGATCAACAGATGATCACGAAGATGAAACTTCCTCCGGCAGCCGGCGGAAAGCTTCGCGGCGG
CGTCGAGTCTCACACGACGAACCTGAAAAGAGGTGCACCAATTACAATTGCAACACTAATTTTACACCCATGTGGCGTAAAGGACCTCTAGGTCCCAAGAGCCTGTGCAA
TGCCTGCGGCATAAGGTATAGGAAGGAGTTGATGAATCGGGAGGCGATGACGGCAGAAAACAGCCACAAC
mRNA sequenceShow/hide mRNA sequence
ATTAATCAGGTGGCCGCGGTGAACAATAATGTTGGGTTGGCGTCGTGCGGTGGGATGAGTGAAGCAAATTACAACCCTAACCAAATTTTATGGTCAAAAGAGCTGAAAAC
CTACGTTCTTAAGTCAAATAATCAAACTTCATTGGGTAGTCATGATCAAGTGAAGGGCAATATTGGCATTGGAAATGGCAGCACTACAAATAACTTGGCCAATGTTCCTC
TTCAAACCAACAGCAACGACCTCTACACACTCCTCAACCCCGCTTCAAGATCAACAGATGATCACGAAGATGAAACTTCCTCCGGCAGCCGGCGGAAAGCTTCGCGGCGG
CGTCGAGTCTCACACGACGAACCTGAAAAGAGGTGCACCAATTACAATTGCAACACTAATTTTACACCCATGTGGCGTAAAGGACCTCTAGGTCCCAAGAGCCTGTGCAA
TGCCTGCGGCATAAGGTATAGGAAGGAGTTGATGAATCGGGAGGCGATGACGGCAGAAAACAGCCACAAC
Protein sequenceShow/hide protein sequence
INQVAAVNNNVGLASCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGNGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASRR
RRVSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN