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MS010297 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010297
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAP2/ERF domain-containing transcription factor, putative
Genome locationscaffold391:1477432..1477740
RNA-Seq ExpressionMS010297
SyntenyMS010297
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001471 - AP2/ERF domain
IPR016177 - DNA-binding domain superfamily
IPR036955 - AP2/ERF domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570315.1 Ethylene-responsive transcription factor ERN1, partial [Cucurbita argyrosperma subsp. sororia]3.6e-3581Show/hide
Query:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR
        +VS  K+GK KDR+ +  FVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAA AYDEAA LLRGANTRTNF +HL S S LS KIRNLLNQK+SLKR
Subjt:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR

KAG7010209.1 Ethylene-responsive transcription factor RAP2-11, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-3581Show/hide
Query:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR
        +VS  K+GK KDR+ +  FVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAA AYDEAA LLRGANTRTNF +HL S S LS KIRNLLNQK+SLKR
Subjt:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR

XP_022153759.1 ethylene-responsive transcription factor RAP2-11 [Momordica charantia]1.3e-48100Show/hide
Query:  QLEAVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKIS
        QLEAVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKIS
Subjt:  QLEAVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKIS

Query:  LKR
        LKR
Subjt:  LKR

XP_022985763.1 ethylene-responsive transcription factor RAP2-11-like [Cucurbita maxima]2.1e-3582Show/hide
Query:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR
        +VS  K+GK KDR+ +  FVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAA AYDEAA LLRGANTRTNF +HL S S LS KIRNLLNQKISLKR
Subjt:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR

XP_023512705.1 ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pepo]2.7e-3582Show/hide
Query:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR
        +VS  K+GK KDR+ +  FVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAA AYDEAA LLRGANTRTNF +HL S S LS KIRNLLNQKISLKR
Subjt:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR

TrEMBL top hitse value%identityAlignment
A0A2I4FS94 ethylene-responsive transcription factor ERN11.0e-3272.38Show/hide
Query:  QLEAVSSRKLGKFKDRT---CKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQ
        Q + VS+ K   +K RT   C+ KFVGVRQRPSGKWVAEIKDTTH IRMWLGTF+TAEEAARAYDEAACLLRGANTRTNF +H++  S LSLKI+NLL+Q
Subjt:  QLEAVSSRKLGKFKDRT---CKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQ

Query:  KISLK
        K ++K
Subjt:  KISLK

A0A6A6KCS5 AP2/ERF domain-containing protein9.4e-3473.83Show/hide
Query:  QLEAVSSRKLGKFKDR----TCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLN
        Q + VS  K  KFK+R    TC+SKFVGVRQRPSGKWVAEIKDTT  IRMWLGTF TAEEAARAYDEAACLLRG+NTRTNFT+H+ + S +S+KIRNLLN
Subjt:  QLEAVSSRKLGKFKDR----TCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLN

Query:  QKISLKR
         K SLK+
Subjt:  QKISLKR

A0A6J1DK11 ethylene-responsive transcription factor RAP2-116.1e-49100Show/hide
Query:  QLEAVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKIS
        QLEAVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKIS
Subjt:  QLEAVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKIS

Query:  LKR
        LKR
Subjt:  LKR

A0A6J1FVD0 ethylene-responsive transcription factor RAP2-11-like5.0e-3581Show/hide
Query:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR
        +VS  K+GK KDR+ +  FVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAA AYDEAA LLRGANTRTNF +HL S   LS KIRNLLNQKISLKR
Subjt:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR

A0A6J1JC79 ethylene-responsive transcription factor RAP2-11-like1.0e-3582Show/hide
Query:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR
        +VS  K+GK KDR+ +  FVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAA AYDEAA LLRGANTRTNF +HL S S LS KIRNLLNQKISLKR
Subjt:  AVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR

SwissProt top hitse value%identityAlignment
A0A1X9PY88 Ethylene-responsive transcription factor ERN14.7e-3071.43Show/hide
Query:  KLGKFKDRTCKS---KFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR
        K GKFK R   S   KFVGVRQRPSG+WVAEIKDTT  IRMWLGTF+TAEEAARAYDEAACLLRG+NTRTNF +H++  S L+ +IRNLLN K   K+
Subjt:  KLGKFKDRTCKS---KFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR

A2Q5W1 Ethylene-responsive transcription factor ERN11.0e-2970.83Show/hide
Query:  SRKLGKFKDRTCKS----KFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQK
        + K GKFK R   S    KFVGVRQRPSG+WVAEIKDTT  IRMWLGTF+TAEEAARAYDEAACLLRG+NTRTNF +H++  S L+ +IRNLLN +
Subjt:  SRKLGKFKDRTCKS----KFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQK

A9Y0K8 Ethylene-responsive transcription factor ERN22.2e-2764Show/hide
Query:  EAVSSRKLGKFKDRTCKS----KFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQK
        +++  +K+ KFK R  KS    KFVGVRQRPSG++VAEIKDTT +IRMWLGTF+TAEEAARAYDEAA LLRG+ TRTNF +H++  S L+ +IR+LLN +
Subjt:  EAVSSRKLGKFKDRTCKS----KFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQK

A9Y0K9 Ethylene-responsive transcription factor ERN35.9e-2571.95Show/hide
Query:  KSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNF--TSHLNSKSILSLKIRNLLNQK
        +SKFVGVRQR SGKW AEIKDT+ +IRMWLGT+KTAEEAARAYDEAA LLRG NTRTNF  T  + + S +SLK++NLL++K
Subjt:  KSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNF--TSHLNSKSILSLKIRNLLNQK

Q6J9S1 Ethylene-responsive transcription factor RAP2-112.2e-3277.17Show/hide
Query:  KFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR
        K K +  K+KFVGVRQRPSGKWVAEIKDTT  IRMWLGTF+TAEEAARAYDEAACLLRG+NTRTNF +H  + S LSLKIRNLL+QK S+K+
Subjt:  KFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR

Arabidopsis top hitse value%identityAlignment
AT1G53910.1 related to AP2 125.1e-1657.58Show/hide
Query:  KFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNF
        K  +R  K+++ G+RQRP GKW AEI+D     R+WLGTFKTAEEAARAYD AA  +RG+  + NF
Subjt:  KFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNF

AT1G53910.2 related to AP2 125.1e-1657.58Show/hide
Query:  KFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNF
        K  +R  K+++ G+RQRP GKW AEI+D     R+WLGTFKTAEEAARAYD AA  +RG+  + NF
Subjt:  KFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNF

AT1G53910.3 related to AP2 125.1e-1657.58Show/hide
Query:  KFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNF
        K  +R  K+++ G+RQRP GKW AEI+D     R+WLGTFKTAEEAARAYD AA  +RG+  + NF
Subjt:  KFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNF

AT2G47520.1 Integrase-type DNA-binding superfamily protein5.1e-1651.76Show/hide
Query:  QLEAVSSRK------LGKFKD--RTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNF
        QL +VSSRK      + + +D  R  K+ + G+RQRP GKW AEI+D +  +R+WLGTFKTA+EAARAYD AA  +RG   + NF
Subjt:  QLEAVSSRK------LGKFKD--RTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNF

AT5G19790.1 related to AP2 111.6e-3377.17Show/hide
Query:  KFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR
        K K +  K+KFVGVRQRPSGKWVAEIKDTT  IRMWLGTF+TAEEAARAYDEAACLLRG+NTRTNF +H  + S LSLKIRNLL+QK S+K+
Subjt:  KFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGCTTGAAGCAGTTTCATCCAGAAAACTTGGCAAGTTCAAGGATAGAACTTGTAAAAGCAAGTTTGTTGGTGTCAGACAAAGGCCCTCTGGGAAATGGGTGGCAGAGAT
CAAAGACACAACACATGATATCAGAATGTGGTTGGGAACCTTCAAGACAGCGGAAGAGGCTGCCAGAGCCTACGATGAAGCTGCATGCCTCCTCCGCGGTGCCAACACTC
GAACCAACTTTACATCCCATCTCAATTCTAAATCCATCCTCTCTTTGAAAATCAGAAACCTCCTGAACCAGAAGATCAGTTTGAAAAGA
mRNA sequenceShow/hide mRNA sequence
CAGCTTGAAGCAGTTTCATCCAGAAAACTTGGCAAGTTCAAGGATAGAACTTGTAAAAGCAAGTTTGTTGGTGTCAGACAAAGGCCCTCTGGGAAATGGGTGGCAGAGAT
CAAAGACACAACACATGATATCAGAATGTGGTTGGGAACCTTCAAGACAGCGGAAGAGGCTGCCAGAGCCTACGATGAAGCTGCATGCCTCCTCCGCGGTGCCAACACTC
GAACCAACTTTACATCCCATCTCAATTCTAAATCCATCCTCTCTTTGAAAATCAGAAACCTCCTGAACCAGAAGATCAGTTTGAAAAGA
Protein sequenceShow/hide protein sequence
QLEAVSSRKLGKFKDRTCKSKFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAARAYDEAACLLRGANTRTNFTSHLNSKSILSLKIRNLLNQKISLKR