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MS010329 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010329
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationscaffold878:252133..252381
RNA-Seq ExpressionMS010329
SyntenyMS010329
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650635.1 protein transport protein Sec61 subunit beta [Cucumis sativus]4.9e-2786.75Show/hide
Query:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
        M  GGG PQRGSAAATASMRRRR T+SS TSGGA+G+MLQFYTDDAPGL+ISPNVVLVMSIGFIAFV++LHVMGKLYFVRREA
Subjt:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA

XP_022144306.1 protein transport protein Sec61 subunit beta-like [Momordica charantia]6.0e-33100Show/hide
Query:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
        MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
Subjt:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA

XP_022146520.1 protein transport protein Sec61 subunit beta-like [Momordica charantia]6.4e-2787.95Show/hide
Query:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
        M  GG APQRGSAAATASMRRRR T+SS TSGGA+G+MLQFYTDDAPGL+ISPNVVLVMSIGFIAFV+ILHVMGKLYFVRREA
Subjt:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA

XP_022950482.1 protein transport protein Sec61 subunit beta-like [Cucurbita moschata]1.3e-2789.16Show/hide
Query:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
        M  GGGAPQRGSAAATASMRRRR T+SS TSGGA+G+MLQFYTDDAPGL+ISPNVVLVMSIGFIAFV+ILHVMGKLYFVRREA
Subjt:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA

XP_038875187.1 protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida]6.4e-2787.95Show/hide
Query:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
        M  GG APQRGSAAATASMRRRR T+SS TSGGA+G+MLQFYTDDAPGL+ISPNVVLVMSIGFIAFV+ILHVMGKLYFVRREA
Subjt:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA

TrEMBL top hitse value%identityAlignment
A0A0A0L6Y8 Protein transport protein Sec61 subunit beta2.4e-2786.75Show/hide
Query:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
        M  GGG PQRGSAAATASMRRRR T+SS TSGGA+G+MLQFYTDDAPGL+ISPNVVLVMSIGFIAFV++LHVMGKLYFVRREA
Subjt:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA

A0A6J1CT03 Protein transport protein Sec61 subunit beta2.9e-33100Show/hide
Query:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
        MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
Subjt:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA

A0A6J1EFZ9 Protein transport protein Sec61 subunit beta3.1e-2787.95Show/hide
Query:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
        M  GG APQRGSAAATASMRRRR T+SS TSGGA+G+MLQFYTDDAPGL+ISPNVVLVMSIGFIAFV+ILHVMGKLYFVRREA
Subjt:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA

A0A6J1GEY3 Protein transport protein Sec61 subunit beta6.2e-2889.16Show/hide
Query:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
        M  GGGAPQRGSAAATASMRRRR T+SS TSGGA+G+MLQFYTDDAPGL+ISPNVVLVMSIGFIAFV+ILHVMGKLYFVRREA
Subjt:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA

A0A6J1IH25 Protein transport protein Sec61 subunit beta6.2e-2889.16Show/hide
Query:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA
        M  GGGAPQRGSAAATASMRRRR T+SS TSGGA+G+MLQFYTDDAPGL+ISPNVVLVMSIGFIAFV+ILHVMGKLYFVRREA
Subjt:  MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA

SwissProt top hitse value%identityAlignment
A8I6P9 Protein transport protein Sec61 subunit beta1.3e-0645.95Show/hide
Query:  GGGAPQRGSAAATASMRRR--RSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGK
        GG +       A  ++RRR  R +  S T+     +M  FYTDD PG ++SP VV+ MS+ FIAFV+ILHV+GK
Subjt:  GGGAPQRGSAAATASMRRR--RSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGK

P38389 Protein transport protein Sec61 subunit beta1.6e-2580Show/hide
Query:  GGGAPQRGSAAATASMRRRRSTSSS---ATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR
        G GAPQRGSAAATASMRRR+ TS +     SGGA+GSMLQFYTDDAPGL+ISPNVVL+MSIGFIAFV++LHVMGKLYFV+
Subjt:  GGGAPQRGSAAATASMRRRRSTSSS---ATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR

P60467 Protein transport protein Sec61 subunit beta4.9e-0641.46Show/hide
Query:  MGTGGGAPQRGSA--AATASMRRRRSTSSSATSGG-----ASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGK
        +G+ G +P +  A  AA +++R+R++ S    S G      +G M +FYT+D+PGL++ P  VLVMS+ FIA V +LH+ GK
Subjt:  MGTGGGAPQRGSA--AATASMRRRRSTSSSATSGG-----ASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGK

P60468 Protein transport protein Sec61 subunit beta4.9e-0641.46Show/hide
Query:  MGTGGGAPQRGSA--AATASMRRRRSTSSSATSGG-----ASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGK
        +G+ G +P +  A  AA +++R+R++ S    S G      +G M +FYT+D+PGL++ P  VLVMS+ FIA V +LH+ GK
Subjt:  MGTGGGAPQRGSA--AATASMRRRRSTSSSATSGG-----ASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGK

Q9CQS8 Protein transport protein Sec61 subunit beta4.9e-0641.46Show/hide
Query:  MGTGGGAPQRGSA--AATASMRRRRSTSSSATSGG-----ASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGK
        +G+ G +P +  A  AA +++R+R++ S    S G      +G M +FYT+D+PGL++ P  VLVMS+ FIA V +LH+ GK
Subjt:  MGTGGGAPQRGSA--AATASMRRRRSTSSSATSGG-----ASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGK

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein1.2e-2680Show/hide
Query:  GGGAPQRGSAAATASMRRRRSTSSS---ATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR
        G GAPQRGSAAATASMRRR+ TS +     SGGA+GSMLQFYTDDAPGL+ISPNVVL+MSIGFIAFV++LHVMGKLYFV+
Subjt:  GGGAPQRGSAAATASMRRRRSTSSS---ATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein1.2e-2680Show/hide
Query:  GGGAPQRGSAAATASMRRRRSTSSS---ATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR
        G GAPQRGSAAATASMRRR+ TS +     SGGA+GSMLQFYTDDAPGL+ISPNVVL+MSIGFIAFV++LHVMGKLYFV+
Subjt:  GGGAPQRGSAAATASMRRRRSTSSS---ATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein1.2e-2680Show/hide
Query:  GGGAPQRGSAAATASMRRRRSTSSS---ATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR
        G GAPQRGSAAATASMRRR+ TS +     SGGA+GSMLQFYTDDAPGL+ISPNVVL+MSIGFIAFV++LHVMGKLYFV+
Subjt:  GGGAPQRGSAAATASMRRRRSTSSS---ATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR

AT3G60540.1 Preprotein translocase Sec, Sec61-beta subunit protein2.3e-2779.22Show/hide
Query:  GGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR
        GGGAPQRGSAAATASMRRR+    S+++GG +G+MLQFYTDDAPGL+ISPNVVL+MSIGFIAFV++LHVMGKLYFV+
Subjt:  GGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR

AT3G60540.2 Preprotein translocase Sec, Sec61-beta subunit protein2.3e-2779.22Show/hide
Query:  GGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR
        GGGAPQRGSAAATASMRRR+    S+++GG +G+MLQFYTDDAPGL+ISPNVVL+MSIGFIAFV++LHVMGKLYFV+
Subjt:  GGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTACAGGAGGAGGAGCTCCGCAGAGAGGAAGTGCAGCCGCTACTGCAAGCATGCGCAGGAGGAGATCGACGAGTAGTTCTGCTACATCTGGAGGGGCATCTGGATC
GATGCTTCAGTTCTATACAGACGATGCTCCAGGACTGAGGATATCCCCAAATGTTGTTCTGGTCATGAGCATTGGTTTCATAGCTTTTGTTTCTATTCTCCATGTTATGG
GGAAGTTGTACTTCGTGCGAAGAGAAGCT
mRNA sequenceShow/hide mRNA sequence
ATGGGTACAGGAGGAGGAGCTCCGCAGAGAGGAAGTGCAGCCGCTACTGCAAGCATGCGCAGGAGGAGATCGACGAGTAGTTCTGCTACATCTGGAGGGGCATCTGGATC
GATGCTTCAGTTCTATACAGACGATGCTCCAGGACTGAGGATATCCCCAAATGTTGTTCTGGTCATGAGCATTGGTTTCATAGCTTTTGTTTCTATTCTCCATGTTATGG
GGAAGTTGTACTTCGTGCGAAGAGAAGCT
Protein sequenceShow/hide protein sequence
MGTGGGAPQRGSAAATASMRRRRSTSSSATSGGASGSMLQFYTDDAPGLRISPNVVLVMSIGFIAFVSILHVMGKLYFVRREA