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MS010330 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010330
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationscaffold878:254647..254895
RNA-Seq ExpressionMS010330
SyntenyMS010330
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1225231.1 Protein transport protein Sec61 subunit beta [Morella rubra]1.5e-3196.34Show/hide
Query:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG APQRGSAAATASMRRRRTTSSG SGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVA+LHVMGKLYFVRREA
Subjt:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_011650635.1 protein transport protein Sec61 subunit beta [Cucumis sativus]8.6e-3296.34Show/hide
Query:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVA+LHVMGKLYFVRREA
Subjt:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_022146520.1 protein transport protein Sec61 subunit beta-like [Momordica charantia]7.8e-33100Show/hide
Query:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_022950482.1 protein transport protein Sec61 subunit beta-like [Cucurbita moschata]2.3e-3298.78Show/hide
Query:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG APQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_038875187.1 protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida]2.1e-33100Show/hide
Query:  RMALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        RMALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  RMALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

TrEMBL top hitse value%identityAlignment
A0A6J1CXG1 Protein transport protein Sec61 subunit beta3.8e-33100Show/hide
Query:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1EFZ9 Protein transport protein Sec61 subunit beta3.8e-33100Show/hide
Query:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1GEY3 Protein transport protein Sec61 subunit beta1.1e-3298.78Show/hide
Query:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG APQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1IH25 Protein transport protein Sec61 subunit beta1.1e-3298.78Show/hide
Query:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG APQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1J088 Protein transport protein Sec61 subunit beta3.8e-33100Show/hide
Query:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

SwissProt top hitse value%identityAlignment
A8I6P9 Protein transport protein Sec61 subunit beta1.4e-0848.68Show/hide
Query:  MALGGAAPQRGSAAATASMRRRRTTSSGTSG--GAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK
        +A GG +       A  ++RRR    SG SG   A    + FYTDD PG K+SP VV+ MS+ FIAFV ILHV+GK
Subjt:  MALGGAAPQRGSAAATASMRRRRTTSSGTSG--GAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK

P38389 Protein transport protein Sec61 subunit beta1.1e-2681.48Show/hide
Query:  LGGAAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G  APQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGAAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

P60467 Protein transport protein Sec61 subunit beta6.5e-0643.59Show/hide
Query:  GAAPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK
        G +P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VLVMS+ FIA V +LH+ GK
Subjt:  GAAPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK

P60468 Protein transport protein Sec61 subunit beta6.5e-0643.59Show/hide
Query:  GAAPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK
        G +P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VLVMS+ FIA V +LH+ GK
Subjt:  GAAPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK

Q9HFC7 Protein transport protein Sec61 subunit beta1.3e-0649.18Show/hide
Query:  ATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKL
        A AS R   T S G +GG++ TML+ YTD++ GLK+ P VV+V+S+GFI  V  LH++ K+
Subjt:  ATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKL

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein8.0e-2881.48Show/hide
Query:  LGGAAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G  APQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGAAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein8.0e-2881.48Show/hide
Query:  LGGAAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G  APQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGAAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein8.0e-2881.48Show/hide
Query:  LGGAAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G  APQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGAAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT2G45070.4 Preprotein translocase Sec, Sec61-beta subunit protein8.0e-2881.48Show/hide
Query:  LGGAAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G  APQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGAAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT3G60540.1 Preprotein translocase Sec, Sec61-beta subunit protein2.3e-2782.05Show/hide
Query:  LGGAAPQRGSAAATASMRRRRTT-SSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +GG APQRGSAAATASMRRR+    S ++GG AGTMLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGAAPQRGSAAATASMRRRRTT-SSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAATGGCGCTAGGTGGAGCAGCTCCCCAGAGAGGAAGTGCAGCAGCTACTGCAAGCATGCGCAGGAGAAGGACGACGAGTTCTGGTACATCTGGAGGGGCAGCTGGAAC
AATGCTGCAATTTTACACGGATGATGCTCCTGGGCTCAAGATATCCCCTAACGTCGTTCTTGTCATGAGCATTGGTTTCATAGCTTTTGTTGCTATTCTCCATGTTATGG
GTAAGCTGTACTTCGTGCGAAGGGAAGCT
mRNA sequenceShow/hide mRNA sequence
AGAATGGCGCTAGGTGGAGCAGCTCCCCAGAGAGGAAGTGCAGCAGCTACTGCAAGCATGCGCAGGAGAAGGACGACGAGTTCTGGTACATCTGGAGGGGCAGCTGGAAC
AATGCTGCAATTTTACACGGATGATGCTCCTGGGCTCAAGATATCCCCTAACGTCGTTCTTGTCATGAGCATTGGTTTCATAGCTTTTGTTGCTATTCTCCATGTTATGG
GTAAGCTGTACTTCGTGCGAAGGGAAGCT
Protein sequenceShow/hide protein sequence
RMALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA