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MS010347 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010347
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold878:369357..369533
RNA-Seq ExpressionMS010347
SyntenyMS010347
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA22845.1 Hypothetical predicted protein, partial [Prunus dulcis]2.2e-0540.35Show/hide
Query:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
        P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Subjt:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
VVA30963.1 Hypothetical predicted protein, partial [Prunus dulcis]2.2e-0540.35Show/hide
Query:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
        P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Subjt:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
XP_034223760.1 THO complex subunit 1 isoform X1 [Prunus dulcis]2.2e-0540.35Show/hide
Query:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
        P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Subjt:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
XP_034223762.1 THO complex subunit 1 isoform X3 [Prunus dulcis]2.2e-0540.35Show/hide
Query:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
        P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Subjt:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
XP_034223765.1 THO complex subunit 1 isoform X5 [Prunus dulcis]2.2e-0540.35Show/hide
Query:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
        P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Subjt:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
TrEMBL top hitse value%identityAlignment
A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein1.1e-0540Show/hide
Query:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPH
        PK  KFF+W+L    +N  D +Q  +  + LSP+WC +CN   E++  LF  CP+
Subjt:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPH
A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein1.1e-0540Show/hide
Query:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPH
        PK  KFF+W+L    +N  D +Q  +  + LSP+WC +CN   E++  LF  CP+
Subjt:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPH
A0A5E4F410 zf-RVT domain-containing protein (Fragment)1.1e-0540.35Show/hide
Query:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
        P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Subjt:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
A0A5E4FPC7 zf-RVT domain-containing protein (Fragment)1.1e-0540.35Show/hide
Query:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
        P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Subjt:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
A0A5E4FU33 zf-RVT domain-containing protein (Fragment)1.1e-0540.35Show/hide
Query:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
        P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Subjt:  PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCAAAGATAATAAATTCTTCATGTGGTCCTTGGCATTTAGAGGAGTCAACAGAACTGATTGTGTCCAAAACGTCATTTCTTTCTTTTGCCTTTCTCCTGATTGGTGTGT
CCTTTGCAATAGTGAGAATGAAAATCTAGAGGGCCTGTTTTCCCAATGTCCCCACATGATGGGATCT
mRNA sequenceShow/hide mRNA sequence
CCCAAAGATAATAAATTCTTCATGTGGTCCTTGGCATTTAGAGGAGTCAACAGAACTGATTGTGTCCAAAACGTCATTTCTTTCTTTTGCCTTTCTCCTGATTGGTGTGT
CCTTTGCAATAGTGAGAATGAAAATCTAGAGGGCCTGTTTTCCCAATGTCCCCACATGATGGGATCT
Protein sequenceShow/hide protein sequence
PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMMGS