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MS010401 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010401
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSplicing factor subunit
Genome locationscaffold878:664043..664391
RNA-Seq ExpressionMS010401
SyntenyMS010401
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0004674 - protein serine/threonine kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10
IPR017089 - Splicing factor 3B, subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5537654.1 hypothetical protein DKX38_015187 [Salix brachista]5.7e-3488.61Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFS
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+LAYFA+AENESIGRERYNFMQ G++S +
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFS

NP_001328050.1 Splicing factor 3B subunit 5/RDS3 complex subunit 10 [Arabidopsis thaliana]7.4e-3493.51Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLS
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQV +LS
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLS

RID65454.1 hypothetical protein BRARA_D00645 [Brassica rapa]3.3e-3490.12Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASY+GHYP+LAYFAIAENESIGRERYNFMQ  +L   FP
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP

XP_020085541.1 uncharacterized protein At4g14342 [Ananas comosus]9.7e-3487.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFPCQ
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASY+GHYP+LAYFAIAENESIGRERYNFMQ  +L    P Q
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFPCQ

XP_022144699.1 uncharacterized protein At4g14342 isoform X1 [Momordica charantia]5.7e-3491.36Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ  +L    P
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP

TrEMBL top hitse value%identityAlignment
A0A397ZM77 Splicing factor subunit1.6e-3490.12Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASY+GHYP+LAYFAIAENESIGRERYNFMQ  +L   FP
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP

A0A5N5L4I2 Uncharacterized protein2.7e-3488.61Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFS
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+LAYFA+AENESIGRERYNFMQ G++S +
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFS

A0A654FP47 Uncharacterized protein3.6e-3493.51Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLS
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQV +LS
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLS

A0A6J1CT26 Splicing factor subunit2.7e-3491.36Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ  +L    P
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP

A0A803R3K1 Uncharacterized protein2.7e-3491.25Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSF
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGRERYNFMQV +  F F
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSF

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143424.8e-3687.65Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ  +L    P
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP

Q56K13 Splicing factor 3B subunit 52.0e-2163.77Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        +DR+ I+SQLEHLQ+KY+GTGHAD +++EW VN  RDSY SY+GH+ +L YFAIAENES  R R+N M+
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Q9BWJ5 Splicing factor 3B subunit 52.0e-2163.77Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        +DR+ I+SQLEHLQ+KY+GTGHAD +++EW VN  RDSY SY+GH+ +L YFAIAENES  R R+N M+
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Q9LW64 Uncharacterized protein At3g233251.4e-3586.42Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ  +L    P
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP

Q9VHI4 Splicing factor 3B subunit 56.7e-2267.65Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        +R+NI+SQLEHLQ+KY+GTGHAD ++FEW  N  RDS ASY+GHY IL YFAIAENES  R R+N M+
Subjt:  DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 109.9e-3786.42Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ  +L    P
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 103.4e-3787.65Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP
        MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ  +L    P
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCTAGTGATAGATTTAACATCAATTCTCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCATGCTGATTTAAGTAGATTTGAATGGGCCGTGAACAT
TCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCATACTTCGCCATAGCAGAAAATGAATCTATTGGAAGGGAACGCTACAATTTTATGCAGGTCG
GTGTATTGTCTTTCTCTTTTCCCTGCCAAGCTTCCCCTTCT
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCTAGTGATAGATTTAACATCAATTCTCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCATGCTGATTTAAGTAGATTTGAATGGGCCGTGAACAT
TCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCATACTTCGCCATAGCAGAAAATGAATCTATTGGAAGGGAACGCTACAATTTTATGCAGGTCG
GTGTATTGTCTTTCTCTTTTCCCTGCCAAGCTTCCCCTTCT
Protein sequenceShow/hide protein sequence
MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVGVLSFSFPCQASPS