; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010403 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010403
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionC2H2-type domain-containing protein
Genome locationscaffold878:676823..677518
RNA-Seq ExpressionMS010403
SyntenyMS010403
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049241.1 hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa]4.4e-6561.54Show/hide
Query:  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQ
        MA LLQP L ALFFL  +FSP+ S PWNSS F KSG NPS +++L TS E+S R   R+NTIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS  R  
Subjt:  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQ

Query:  SQPSTSRLRPPPWTSYFHGQSSASRQPQMTLNDYLAQPRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANGINGQQNQFAA----------
        S P +     PP   +FHGQ+SASR+PQMTLNDYL  P   PSLR +SGAA+DMAH   LPLHPLLA+ P  PRT++ N +N QQNQ  A          
Subjt:  SQPSTSRLRPPPWTSYFHGQSSASRQPQMTLNDYLAQPRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANGINGQQNQFAA----------

Query:  ---GQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL
           G++ +  G P +EQQPPQDVID++SEE++C+SDGSE LDLTLSL
Subjt:  ---GQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL

KAG6582389.1 hypothetical protein SDJN03_22391, partial [Cucurbita argyrosperma subsp. sororia]5.6e-2041.63Show/hide
Query:  SFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQSQPSTSRLRPP----------PW
        SFPW SS FDKS WNPS++ELL TS +TS R   RKNTIFGAPCGLCGQ I  SE L HH     L + L         P  S LR            PW
Subjt:  SFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQSQPSTSRLRPP----------PW

Query:  TSYFHGQSSASRQPQMTL---NDYLAQPRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQPPRTASANGINGQQNQFAAGQLGQRMGTPTAEQQPPQDVID
         S        S+ P  TL   +D     ++L   RR    AVDM  AH LPLHPLLAQ PP   + N I                             + 
Subjt:  TSYFHGQSSASRQPQMTL---NDYLAQPRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQPPRTASANGINGQQNQFAAGQLGQRMGTPTAEQQPPQDVID

Query:  VNSEEHECNSDGSEDLDLTLS
          + E+ C+S GSEDLDLTLS
Subjt:  VNSEEHECNSDGSEDLDLTLS

KAG6597359.1 hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sororia]3.7e-6460.82Show/hide
Query:  LLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQSQ
        LL    L  L F + AFSP+L+FPW+SS ++KSGWNPS EELL  SGETS R  RRK+TIFGAPCGLCGQVIFGSEAL HHYNYHFLQN LAS G     
Subjt:  LLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQSQ

Query:  PSTSRLRPPPWTSYFHGQSSASRQPQMTLNDYLAQ--PRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQPP--RTASANGIN---------GQQNQFAAG
         S S  RPP WT YFHGQ+SASR+PQ+TLN+ L    PRQ  SLR Y    VDMAH   LPLHPLLAQ PP  R  +ANG+N         G QNQ   G
Subjt:  PSTSRLRPPPWTSYFHGQSSASRQPQMTLNDYLAQ--PRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQPP--RTASANGIN---------GQQNQFAAG

Query:  QLGQRMGTPTAEQ-QPPQDVIDVNS-EEHECNSDGSEDLDLTLSL
                  AEQ QP Q+VID+NS EE++C+SDGS+ LDLTLSL
Subjt:  QLGQRMGTPTAEQ-QPPQDVIDVNS-EEHECNSDGSEDLDLTLSL

KGN56847.1 hypothetical protein Csa_010766 [Cucumis sativus]4.5e-7064.52Show/hide
Query:  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQ
        M  LLQP L ALFFL  +FSP+LSFP NSS F +S  NPS   +L TS E+SGR  RRKNTIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS  R  
Subjt:  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQ

Query:  SQPSTS-RLRPPPWTSYFHGQSSASRQPQMTLNDYLAQPRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANGINGQQNQFAAGQLGQRM--
        S PS+    RPP W++YFHGQ+SASR+PQMTLNDYL  P   PSLR YSGAA+DMAH   LPLHPLLAQ P  PRT++AN +N QQNQ  AG   Q    
Subjt:  SQPSTS-RLRPPPWTSYFHGQSSASRQPQMTLNDYLAQPRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANGINGQQNQFAAGQLGQRM--

Query:  -----------GTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL
                   G P +E+QPPQDVID+NSEE++C+SD SE LDLTLSL
Subjt:  -----------GTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL

TrEMBL top hitse value%identityAlignment
A0A0A0L892 C2H2-type domain-containing protein2.2e-7064.52Show/hide
Query:  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQ
        M  LLQP L ALFFL  +FSP+LSFP NSS F +S  NPS   +L TS E+SGR  RRKNTIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS  R  
Subjt:  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQ

Query:  SQPSTS-RLRPPPWTSYFHGQSSASRQPQMTLNDYLAQPRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANGINGQQNQFAAGQLGQRM--
        S PS+    RPP W++YFHGQ+SASR+PQMTLNDYL  P   PSLR YSGAA+DMAH   LPLHPLLAQ P  PRT++AN +N QQNQ  AG   Q    
Subjt:  SQPSTS-RLRPPPWTSYFHGQSSASRQPQMTLNDYLAQPRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANGINGQQNQFAAGQLGQRM--

Query:  -----------GTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL
                   G P +E+QPPQDVID+NSEE++C+SD SE LDLTLSL
Subjt:  -----------GTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL

A0A5A7U6I9 C2H2-type domain-containing protein2.1e-6561.54Show/hide
Query:  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQ
        MA LLQP L ALFFL  +FSP+ S PWNSS F KSG NPS +++L TS E+S R   R+NTIFGAPCGLCGQVIFGSEAL HHYNYHFLQN+LAS  R  
Subjt:  MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQ

Query:  SQPSTSRLRPPPWTSYFHGQSSASRQPQMTLNDYLAQPRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANGINGQQNQFAA----------
        S P +     PP   +FHGQ+SASR+PQMTLNDYL  P   PSLR +SGAA+DMAH   LPLHPLLA+ P  PRT++ N +N QQNQ  A          
Subjt:  SQPSTSRLRPPPWTSYFHGQSSASRQPQMTLNDYLAQPRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQP--PRTASANGINGQQNQFAA----------

Query:  ---GQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL
           G++ +  G P +EQQPPQDVID++SEE++C+SDGSE LDLTLSL
Subjt:  ---GQLGQRMGTPTAEQQPPQDVIDVNSEEHECNSDGSEDLDLTLSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCTTCTGCTTCAACCTTCTCTCTCTGCTCTGTTTTTTCTCATCATGGCCTTCTCTCCTGCTCTGTCTTTCCCTTGGAATTCCTCCCATTTTGACAAATCCGGCTG
GAACCCATCATACGAGGAGCTGTTGCCGACCTCCGGCGAGACTTCCGGCCGGCGGTATCGCCGGAAGAACACAATTTTCGGAGCCCCTTGTGGGCTCTGCGGCCAAGTGA
TTTTTGGCTCGGAGGCTCTAACTCACCATTATAATTACCATTTCTTGCAGAATCAACTTGCTTCTTCTGGTAGATCTCAGTCTCAGCCCTCAACTTCTCGGCTCCGGCCG
CCGCCGTGGACCAGTTATTTCCATGGCCAATCCTCTGCTTCTCGGCAACCCCAAATGACCCTTAACGATTATTTGGCGCAGCCGCGACAGCTGCCGTCTCTGAGAAGATA
TTCCGGCGCCGCAGTTGACATGGCCCACGCCCACCAGCTGCCGCTTCACCCATTGTTGGCCCAACAGCCGCCGCGGACCGCCTCCGCCAACGGTATTAACGGTCAACAGA
ATCAGTTTGCGGCGGGGCAGTTGGGACAGCGGATGGGGACCCCAACGGCGGAGCAGCAGCCACCGCAGGATGTGATTGATGTTAATAGCGAGGAGCATGAGTGTAATTCT
GATGGCTCAGAGGACTTGGATTTGACATTGAGTCTC
mRNA sequenceShow/hide mRNA sequence
ATGGCCCTTCTGCTTCAACCTTCTCTCTCTGCTCTGTTTTTTCTCATCATGGCCTTCTCTCCTGCTCTGTCTTTCCCTTGGAATTCCTCCCATTTTGACAAATCCGGCTG
GAACCCATCATACGAGGAGCTGTTGCCGACCTCCGGCGAGACTTCCGGCCGGCGGTATCGCCGGAAGAACACAATTTTCGGAGCCCCTTGTGGGCTCTGCGGCCAAGTGA
TTTTTGGCTCGGAGGCTCTAACTCACCATTATAATTACCATTTCTTGCAGAATCAACTTGCTTCTTCTGGTAGATCTCAGTCTCAGCCCTCAACTTCTCGGCTCCGGCCG
CCGCCGTGGACCAGTTATTTCCATGGCCAATCCTCTGCTTCTCGGCAACCCCAAATGACCCTTAACGATTATTTGGCGCAGCCGCGACAGCTGCCGTCTCTGAGAAGATA
TTCCGGCGCCGCAGTTGACATGGCCCACGCCCACCAGCTGCCGCTTCACCCATTGTTGGCCCAACAGCCGCCGCGGACCGCCTCCGCCAACGGTATTAACGGTCAACAGA
ATCAGTTTGCGGCGGGGCAGTTGGGACAGCGGATGGGGACCCCAACGGCGGAGCAGCAGCCACCGCAGGATGTGATTGATGTTAATAGCGAGGAGCATGAGTGTAATTCT
GATGGCTCAGAGGACTTGGATTTGACATTGAGTCTC
Protein sequenceShow/hide protein sequence
MALLLQPSLSALFFLIMAFSPALSFPWNSSHFDKSGWNPSYEELLPTSGETSGRRYRRKNTIFGAPCGLCGQVIFGSEALTHHYNYHFLQNQLASSGRSQSQPSTSRLRP
PPWTSYFHGQSSASRQPQMTLNDYLAQPRQLPSLRRYSGAAVDMAHAHQLPLHPLLAQQPPRTASANGINGQQNQFAAGQLGQRMGTPTAEQQPPQDVIDVNSEEHECNS
DGSEDLDLTLSL