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MS010416 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010416
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L28
Genome locationscaffold878:754408..755172
RNA-Seq ExpressionMS010416
SyntenyMS010416
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018806.1 50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-6186.49Show/hide
Query:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA S VLG +P  +SGVMAASS++LHFR+K N ELGFL+SQL G+KISSN+S I ++PISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022145908.1 50S ribosomal protein L28, chloroplastic [Momordica charantia]1.8e-7299.32Show/hide
Query:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGG+KISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022979375.1 50S ribosomal protein L28, chloroplastic [Cucurbita maxima]1.1e-6187.16Show/hide
Query:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA S VLG +P ++SGVMAASS++LHFRTK N ELGFL+SQL G+KISSN+S I  +PISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_023526300.1 50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo]1.9e-6187.16Show/hide
Query:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA S VLG +P  +SGVMAASS++LHFRTK N ELGFL+SQL G+KISSN+S I S+PISAPLRPALQPVARRVCPFTGKKAN+KNLVSFSNHKTKKLQF
Subjt:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]4.9e-6288.51Show/hide
Query:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAA VVLG +P  +SGVMAASST+L F TK NSELGFLTSQL G+KISSN+S I  +PISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A1S3AWK5 50S ribosomal protein L28, chloroplastic1.1e-5985.33Show/hide
Query:  MAASVVLGLSPGNTS-GVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVV G +P  TS GVMA SST+LHFRTK NS+LGFL SQL G+KISSN+S I  +PIS APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVLGLSPGNTS-GVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L281.1e-5985.33Show/hide
Query:  MAASVVLGLSPGNTS-GVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVV G +P  TS GVMA SST+LHFRTK NS+LGFL SQL G+KISSN+S I  +PIS APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVLGLSPGNTS-GVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPIS-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1CX73 50S ribosomal protein L28, chloroplastic8.7e-7399.32Show/hide
Query:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGG+KISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic1.5e-6186.49Show/hide
Query:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA S VLG +P  +SGVMAASS++LHFR+K N ELGFL+SQL G+KISSN+S I ++PISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic5.3e-6287.16Show/hide
Query:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
        MA S VLG +P ++SGVMAASS++LHFRTK N ELGFL+SQL G+KISSN+S I  +PISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF
Subjt:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQF

Query:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  VNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B8HUV7 50S ribosomal protein L286.3e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic1.2e-4271.97Show/hide
Query:  MAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF
        M +S+  +   T  + ELGFLTSQL G++IS   S + +  IS P  P +QP VARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRF
Subjt:  MAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF

Query:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic8.7e-4675.21Show/hide
Query:  RTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK
        ++KL+SEL F+TSQL G+KISS +    SAP+S P +P+LQPVARR+CPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+K
Subjt:  RTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALK

Query:  TIEKNGLDAVAKKAGIDLRKE
        TIEKNGLDAVAKKAGIDL K+
Subjt:  TIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic3.5e-4772.48Show/hide
Query:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKIS-SNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ
        MAAS +L  +P N        S  L  +  + SELGFLTSQL G++IS S   PI S PISAPL+P+LQPVARR+CPFTGKK+NK N VS SNHKTK+LQ
Subjt:  MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKIS-SNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L283.7e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family8.4e-4471.97Show/hide
Query:  MAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF
        M +S+  +   T  + ELGFLTSQL G++IS   S + +  IS P  P +QP VARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRF
Subjt:  MAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF

Query:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTCCGTTGTGTTAGGACTGTCGCCGGGGAATACCTCCGGTGTCATGGCAGCGTCGTCGACTAGACTTCACTTCAGAACTAAACTAAATTCCGAGTTAGGGTT
TCTCACTTCTCAATTGGGTGGCGTCAAAATCTCCTCCAACAACTCGCCGATCCCTTCCGCACCCATTTCTGCTCCTCTCAGACCCGCACTTCAACCCGTTGCTCGTAGAG
TTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAAAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTGTGGTGG
GAAGCTGGGAAGCGTTTTGTAAAACTACGATTATCAACAAAGGCTTTGAAGACCATTGAGAAAAATGGACTTGATGCTGTTGCTAAGAAGGCCGGAATTGATCTTCGCAA
GGAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCTTCCGTTGTGTTAGGACTGTCGCCGGGGAATACCTCCGGTGTCATGGCAGCGTCGTCGACTAGACTTCACTTCAGAACTAAACTAAATTCCGAGTTAGGGTT
TCTCACTTCTCAATTGGGTGGCGTCAAAATCTCCTCCAACAACTCGCCGATCCCTTCCGCACCCATTTCTGCTCCTCTCAGACCCGCACTTCAACCCGTTGCTCGTAGAG
TTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAAAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTGTGGTGG
GAAGCTGGGAAGCGTTTTGTAAAACTACGATTATCAACAAAGGCTTTGAAGACCATTGAGAAAAATGGACTTGATGCTGTTGCTAAGAAGGCCGGAATTGATCTTCGCAA
GGAA
Protein sequenceShow/hide protein sequence
MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGVKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWW
EAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE