; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010435 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010435
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description28 kDa ribonucleoprotein, chloroplastic
Genome locationscaffold878:850921..852958
RNA-Seq ExpressionMS010435
SyntenyMS010435
Gene Ontology termsGO:1901259 - chloroplast rRNA processing (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049207.1 putative G3BP-like protein [Cucumis melo var. makuwa]1.7e-11182.89Show/hide
Query:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG
        MAAAAA  G+SF   T   +G RSKHW SDSLLA PSTQ+LP+LSR L +ES  LRA SE+WRPVL ISAAVVQGE AVT   EEGV EE     AV GG
Subjt:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG

Query:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK
        SPVE+GSTKLYFGNLPYSVDSSQLA IVQ+HGV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LRVNFSDKPKPKEPLYPETEYK
Subjt:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK

Query:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEV
        LFVGNLSWSVTSE LTQAFQEYGNVVGARVIYNGETG+SRGYGFVSYSTK EME ALEALNEV
Subjt:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEV

KAG6597332.1 Nuclear transport factor 2, partial [Cucurbita argyrosperma subsp. sororia]2.7e-10979.77Show/hide
Query:  SKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAE---EKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD
        +K WLSD+LL  PS  M P+LSR LA+ESA LRAFSE+WRP LGISAAVVQ + AVT   EEGVA+   E+G G+AV GGSPVE+G TKLYFGNLPYSVD
Subjt:  SKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAE---EKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD

Query:  SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQ
        SSQLA IVQ++GV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LRVNFSDKPKPK  LYP++EY+L+V NLSWSVTSESL QAFQ
Subjt:  SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQ

Query:  EYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG
        EYGNVVGARVIY+ ETG+SRGYGFVSYSTK EME ALEA NE+ELEGRVIRVSLA+GKQAQG
Subjt:  EYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG

XP_004134038.1 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus]4.4e-12082.62Show/hide
Query:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG
        MAAAAA  G+SF A+  S +G RSKHWLSDSLLA PSTQ+LP+LSR LA+ES  LRA SEKWRPV+ ISAAVVQGE AVT   EEGV EE      V GG
Subjt:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG

Query:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK
        SPVE+GSTKLYFGNLPYSVDSSQLA IVQ++G+ ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDGSAYMGR+LRVNFSDKPKPKEPLYPETEYK
Subjt:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK

Query:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG
        LFVGNLSWSVTSE LTQAFQEYGNVVGARVIY+GETG+SRGYGFVSYSTK EME ALE +NE+ELEGRVIRVSLAEGKQA G
Subjt:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG

XP_016898952.1 PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo]1.5e-11583.09Show/hide
Query:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG
        MAAAAA  G+SF   T   +G RSKHW SDSLLA PSTQ+LP+LSR L +ES  LRA SE+WRPVL ISAAVVQGE AV    EEGV EE     AV GG
Subjt:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG

Query:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK
        SPVE+GSTKLYFGNLPYSVDSSQLA IVQ+HGV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LRVNFSDKPKPKEPLYPETEYK
Subjt:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK

Query:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRV
        LFVGNLSWSVTSE LTQAFQEYGNVVGARVIYNGETG+SRGYGFVSYSTK EME ALEALNEVELEGRVIRV
Subjt:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRV

XP_022157973.1 28 kDa ribonucleoprotein, chloroplastic [Momordica charantia]2.2e-151100Show/hide
Query:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG
        MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG
Subjt:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG

Query:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK
        SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK
Subjt:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK

Query:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG
        LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG
Subjt:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG

TrEMBL top hitse value%identityAlignment
A0A0A0L496 Uncharacterized protein2.1e-12082.62Show/hide
Query:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG
        MAAAAA  G+SF A+  S +G RSKHWLSDSLLA PSTQ+LP+LSR LA+ES  LRA SEKWRPV+ ISAAVVQGE AVT   EEGV EE      V GG
Subjt:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG

Query:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK
        SPVE+GSTKLYFGNLPYSVDSSQLA IVQ++G+ ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDGSAYMGR+LRVNFSDKPKPKEPLYPETEYK
Subjt:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK

Query:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG
        LFVGNLSWSVTSE LTQAFQEYGNVVGARVIY+GETG+SRGYGFVSYSTK EME ALE +NE+ELEGRVIRVSLAEGKQA G
Subjt:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG

A0A1S4DSH7 LOW QUALITY PROTEIN: putative G3BP-like protein7.1e-11683.09Show/hide
Query:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG
        MAAAAA  G+SF   T   +G RSKHW SDSLLA PSTQ+LP+LSR L +ES  LRA SE+WRPVL ISAAVVQGE AV    EEGV EE     AV GG
Subjt:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG

Query:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK
        SPVE+GSTKLYFGNLPYSVDSSQLA IVQ+HGV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LRVNFSDKPKPKEPLYPETEYK
Subjt:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK

Query:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRV
        LFVGNLSWSVTSE LTQAFQEYGNVVGARVIYNGETG+SRGYGFVSYSTK EME ALEALNEVELEGRVIRV
Subjt:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRV

A0A5D3CZH4 Putative G3BP-like protein8.1e-11282.89Show/hide
Query:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG
        MAAAAA  G+SF   T   +G RSKHW SDSLLA PSTQ+LP+LSR L +ES  LRA SE+WRPVL ISAAVVQGE AVT   EEGV EE     AV GG
Subjt:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG

Query:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK
        SPVE+GSTKLYFGNLPYSVDSSQLA IVQ+HGV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LRVNFSDKPKPKEPLYPETEYK
Subjt:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK

Query:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEV
        LFVGNLSWSVTSE LTQAFQEYGNVVGARVIYNGETG+SRGYGFVSYSTK EME ALEALNEV
Subjt:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEV

A0A6J1DUT6 28 kDa ribonucleoprotein, chloroplastic1.0e-151100Show/hide
Query:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG
        MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG
Subjt:  MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGG

Query:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK
        SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK
Subjt:  SPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK

Query:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG
        LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG
Subjt:  LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG

A0A6J1FA65 28 kDa ribonucleoprotein, chloroplastic-like1.3e-10979.77Show/hide
Query:  SKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAE---EKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD
        +K WLSD+LL  PS  M P+LSR LA+ESA LRAFSE+WRP LGISAAVVQ + AVT   EEGVA+   E+G G+AV GGSPVE+G TKLYFGNLPYSVD
Subjt:  SKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAE---EKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD

Query:  SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQ
        SSQLA IVQ++GV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LRVNFSDKPKPK  LYP++EY+L+V NLSWSVTSESL QAFQ
Subjt:  SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQ

Query:  EYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG
        EYGNVVGARVIY+ ETG+SRGYGFVSYSTK EME ALEA NE+ELEGRVIRVSLA+GKQAQG
Subjt:  EYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG

SwissProt top hitse value%identityAlignment
P19683 31 kDa ribonucleoprotein, chloroplastic5.4e-3640.37Show/hide
Query:  EPAVTADAEEGVAEEKGGGEAVGGGSPVEAG-----------STKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNR
        EP+     EEG  E  G     G    VEA              KL+ GNLPY VDS  LA + ++ GV E+ EV+Y+R+T +SRGF FVTMS++E+  +
Subjt:  EPAVTADAEEGVAEEKGGGEAVGGGSPVEAG-----------STKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNR

Query:  VIENLDGSAYMGRVLRVNFS----DKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEAL
         +E  +     GR+L VN +    ++P+ + P   E  Y+++VGN+ W +    L Q F E+G VV ARV+Y+ ETGRSRG+GFV+ +++ EM  A+  L
Subjt:  VIENLDGSAYMGRVLRVNFS----DKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEAL

Query:  NEVELEGRVIRVSLAEGK
        +   L+GR IRV++AE +
Subjt:  NEVELEGRVIRVSLAEGK

P19684 33 kDa ribonucleoprotein, chloroplastic5.7e-3841.47Show/hide
Query:  EPAVTADAEEGV--AEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSA
        E A++A+ EE +   EE+   E+V GG        +LY GNLP+S+ SSQL+ I  E G    +E++YDR T +SRGFAFVTM S+E+    I   DGS 
Subjt:  EPAVTADAEEGV--AEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSA

Query:  YMGRVLRVNFSDKPKPKE------------PLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALN
          GR ++VNF + P+  E              + ++ +KL+V NLSW++TS+ L  AF +    + A+VIY+  +GRSRG+GF+++S+   M  AL+ +N
Subjt:  YMGRVLRVNFSDKPKPKE------------PLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALN

Query:  EVELEGRVIRVSLAEGK
        EVELEGR +R+++A  K
Subjt:  EVELEGRVIRVSLAEGK

P28644 28 kDa ribonucleoprotein, chloroplastic1.3e-3743.12Show/hide
Query:  GISAAVVQGEP----AVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDC
        G + AV++GE     AV+  +E  V++E G     G   P E    KL+ GNLPY VDS +LAGI    GV E+ EV+Y+R T +SRGF FVTMS++E+ 
Subjt:  GISAAVVQGEP----AVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDC

Query:  NRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEY----KLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALE
         + +E L+G    GR L VN    P+      P  ++    +++VGNL W V +  L Q F E+G VV ARV+ + ETGRSRG+GFV+ S++ E+  A+ 
Subjt:  NRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEY----KLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALE

Query:  ALNEVELEGRVIRVSLAE
        AL+   L+GR +RV++AE
Subjt:  ALNEVELEGRVIRVSLAE

P82277 30S ribosomal protein 2, chloroplastic7.0e-3640.91Show/hide
Query:  VAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDK
        V EE          S  E G+ +LY GN+P ++++ +L  IV+EHG  E+ EV+YD+ +G+SR F FVTM ++ED N VIE L+ +   GR ++VN ++K
Subjt:  VAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDK

Query:  P---------KPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLA
        P         + ++  + E+ YK+++GNL+ +VT+E L   F E G V+GA+V     T +S G+GFVS+S++ E+E A++ALN   LEG+ IRV+ A
Subjt:  P---------KPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLA

Q08935 29 kDa ribonucleoprotein A, chloroplastic9.1e-3640.58Show/hide
Query:  DAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRV
        D ++GV EE+         SP      K++ GNLP+S DS+ LA + +  G  E++EV+YD+ TG+SRGF FVTMSS E+     +  +G    GR LRV
Subjt:  DAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRV

Query:  NFSDKPKPKEPL----------YPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIR
        N    P+ +E              ++  +++VGNL+W V  ++L   F E G VV A+V+Y+ ++GRSRG+GFV+YS+  E+  A+E+L+ V+L GR IR
Subjt:  NFSDKPKPKEPL----------YPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIR

Query:  VSLAEGK
        VS AE +
Subjt:  VSLAEGK

Arabidopsis top hitse value%identityAlignment
AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.4e-7066.83Show/hide
Query:  VTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRV
        +T   EE   EEK  G A     P  A +TKLYFGNLPY+VDS+ LA I+Q+   PEL+EVLY+R+TG+SRGFAFVTMS++EDCN +I+NLDG+ Y+GR 
Subjt:  VTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRV

Query:  LRVNFSDKPKP-KEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEG
        L+VNF+DKPKP KEPLYPETE+KLFVGNLSW+VTSESL  AF+E G+VVGARV+++G+TGRSRGYGFV YS+K EME ALE+L+  ELEGR IRV+LA+G
Subjt:  LRVNFSDKPKP-KEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEG

Query:  KQ
        K+
Subjt:  KQ

AT3G52150.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.2e-3640.22Show/hide
Query:  PVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEP---------
        P    + ++Y GN+P +V + QL  +V+EHG  E ++V+YD+ +G+SR F F TM S+ED N V+E L+G+   GR ++VN ++KP    P         
Subjt:  PVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEP---------

Query:  -LYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLA
          + ++ YK++VGNL+ +VT E L   F E G VV A+V     T +S G+GFV++S++ ++E A+ ALN   LEG+ IRV+ A
Subjt:  -LYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLA

AT3G52150.2 RNA-binding (RRM/RBD/RNP motifs) family protein7.2e-3640.22Show/hide
Query:  PVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEP---------
        P    + ++Y GN+P +V + QL  +V+EHG  E ++V+YD+ +G+SR F F TM S+ED N V+E L+G+   GR ++VN ++KP    P         
Subjt:  PVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEP---------

Query:  -LYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLA
          + ++ YK++VGNL+ +VT E L   F E G VV A+V     T +S G+GFV++S++ ++E A+ ALN   LEG+ IRV+ A
Subjt:  -LYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLA

AT3G52380.1 chloroplast RNA-binding protein 331.9e-3638.39Show/hide
Query:  AVVQGEPAVTADAEEG---VAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIE
        A V+ E  V  + +EG   V EEK   +A G     E G  +LY GNLPY++ SS+L+ I  E G    ++++YD+ T +SRGF FVTM SIE+    ++
Subjt:  AVVQGEPAVTADAEEG---VAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIE

Query:  NLDGSAYMGRVLRVNFSDKPKPKE------------PLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEK
          + S   GR ++VNF + P+  E              Y ++ +K++ GNL W++TS+ L  AF +   V+GA+VIY   TGRSRG+GF+S+ +   ++ 
Subjt:  NLDGSAYMGRVLRVNFSDKPKPKE------------PLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEK

Query:  ALEALNEVELEGRVIRVSLAEGKQ
        AL  +N VE+EGR +R++LA  ++
Subjt:  ALEALNEVELEGRVIRVSLAEGKQ

AT5G50250.1 chloroplast RNA-binding protein 31B1.2e-3540.67Show/hide
Query:  ADAEEGVAEEKGGGEAV---------GGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDG
        A+ EEG     GG             G G P      KL+ GNLPY VDS  LA + ++ G  E+ EV+Y+R+T +SRGF FVTMS++E+  + +E  + 
Subjt:  ADAEEGVAEEKGGGEAV---------GGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDG

Query:  SAYMGRVLRVNFS----DKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEG
            GR L VN +     +P+ ++P   +  ++++VGNL W V S  L + F E+G VV ARV+ + ETGRSRG+GFV  S + E+  A+ AL+   LEG
Subjt:  SAYMGRVLRVNFS----DKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEG

Query:  RVIRVSLAE
        R I+V++AE
Subjt:  RVIRVSLAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGCCGCCGCCACCGTCGGCTCGTCCTTCACCGCTTCCACGCACTCCTTTAAGGGTTTACGGTCCAAGCACTGGCTCTCCGATTCTCTCCTCGCAATGCCATC
AACCCAAATGTTGCCTGTCTTGTCACGCTATCTGGCCCTTGAATCGGCTTCGCTCCGAGCTTTCTCCGAGAAGTGGCGGCCGGTTCTGGGCATCTCCGCCGCCGTGGTTC
AAGGAGAACCGGCGGTGACGGCTGATGCTGAAGAAGGTGTGGCGGAGGAGAAGGGAGGAGGGGAAGCGGTGGGTGGTGGTTCTCCGGTGGAGGCCGGGAGTACTAAGCTC
TACTTTGGGAACTTGCCTTACAGCGTTGATAGTTCCCAGCTCGCCGGCATCGTTCAGGAACATGGGGTCCCTGAGCTTATTGAGGTTCTTTATGACAGGAATACTGGAAA
GAGCAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGTAATAGAGTCATCGAAAATCTGGATGGAAGTGCTTACATGGGCAGAGTTTTGAGGGTTAATTTCT
CAGACAAGCCTAAGCCTAAGGAACCTTTATATCCAGAAACAGAGTATAAGCTTTTCGTCGGCAACTTATCCTGGTCGGTAACATCTGAAAGTTTGACACAAGCTTTTCAA
GAATATGGAAATGTGGTAGGAGCAAGGGTCATCTATAATGGGGAGACTGGAAGGTCACGTGGTTATGGCTTTGTATCTTATTCAACAAAACCAGAGATGGAAAAAGCACT
TGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTGAGCTTGGCTGAAGGAAAGCAGGCACAGGGG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGCCGCCGCCACCGTCGGCTCGTCCTTCACCGCTTCCACGCACTCCTTTAAGGGTTTACGGTCCAAGCACTGGCTCTCCGATTCTCTCCTCGCAATGCCATC
AACCCAAATGTTGCCTGTCTTGTCACGCTATCTGGCCCTTGAATCGGCTTCGCTCCGAGCTTTCTCCGAGAAGTGGCGGCCGGTTCTGGGCATCTCCGCCGCCGTGGTTC
AAGGAGAACCGGCGGTGACGGCTGATGCTGAAGAAGGTGTGGCGGAGGAGAAGGGAGGAGGGGAAGCGGTGGGTGGTGGTTCTCCGGTGGAGGCCGGGAGTACTAAGCTC
TACTTTGGGAACTTGCCTTACAGCGTTGATAGTTCCCAGCTCGCCGGCATCGTTCAGGAACATGGGGTCCCTGAGCTTATTGAGGTTCTTTATGACAGGAATACTGGAAA
GAGCAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGTAATAGAGTCATCGAAAATCTGGATGGAAGTGCTTACATGGGCAGAGTTTTGAGGGTTAATTTCT
CAGACAAGCCTAAGCCTAAGGAACCTTTATATCCAGAAACAGAGTATAAGCTTTTCGTCGGCAACTTATCCTGGTCGGTAACATCTGAAAGTTTGACACAAGCTTTTCAA
GAATATGGAAATGTGGTAGGAGCAAGGGTCATCTATAATGGGGAGACTGGAAGGTCACGTGGTTATGGCTTTGTATCTTATTCAACAAAACCAGAGATGGAAAAAGCACT
TGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTGAGCTTGGCTGAAGGAAAGCAGGCACAGGGG
Protein sequenceShow/hide protein sequence
MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKL
YFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQ
EYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG