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MS010460 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010460
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionT-cell surface glycoprotein CD8 beta chain like
Genome locationscaffold94:94930..95289
RNA-Seq ExpressionMS010460
SyntenyMS010460
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600825.1 hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sororia]4.1e-2766.14Show/hide
Query:  MWIQTQ------ILNLLLILSINVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQD
        M IQT+      I +   +LSINVV  HG +SS KLD STGGD   VKCTPCT  + PPPPPPPPKKP  +YC PPPPPPPSSFIY+LGPPGNLYPI +D
Subjt:  MWIQTQ------ILNLLLILSINVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQD

Query:  FAGG-RRRVAVELPVVALLGLMGFIAV
        FAG  RRRV VEL  VAL GL+GF+ V
Subjt:  FAGG-RRRVAVELPVVALLGLMGFIAV

KAG7031461.1 hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2766.93Show/hide
Query:  MWIQTQ------ILNLLLILSINVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQD
        M IQT+      I + L +LSINVV  HG +SS KLD STGGD   VKCTPCT  + PPPPPPPPKKP  +YC PPPPPPPSSFIY+LGPPGNLYPI +D
Subjt:  MWIQTQ------ILNLLLILSINVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQD

Query:  FAGG-RRRVAVELPVVALLGLMGFIAV
        FAG  RRRV VEL  VAL GL+GF+ V
Subjt:  FAGG-RRRVAVELPVVALLGLMGFIAV

XP_022155381.1 acrosin-like [Momordica charantia]8.0e-5599.17Show/hide
Query:  MWIQTQILNLLLILSINVVTIHGLISSNKLDGSTGGDSTVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQDFAGGRRR
        MWIQTQILNLLLILSINVVTIHGLISSNKLDGSTGGDSTVKCTPCTRYNPPPPPPPPPKKPPSSYC PPPPPPPSSFIYMLGPPGNLYPIGQDFAGGRRR
Subjt:  MWIQTQILNLLLILSINVVTIHGLISSNKLDGSTGGDSTVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQDFAGGRRR

Query:  VAVELPVVALLGLMGFIAVW
        VAVELPVVALLGLMGFIAVW
Subjt:  VAVELPVVALLGLMGFIAVW

XP_022942055.1 probable glycosyltransferase 4 [Cucurbita moschata]2.7e-2666.41Show/hide
Query:  MWIQTQILNLLLILSI-------NVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQ
        M IQT+    L ILS        NVV  HG +SS KLD STGGD  +VKCTPCT  + PPPPPPPPKKP  +YC PPPPPPPSSFIY+LGPPGNLYPI +
Subjt:  MWIQTQILNLLLILSI-------NVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQ

Query:  DFAGG-RRRVAVELPVVALLGLMGFIAV
        DFAG  RRRVAVEL  VAL GL+GF+ V
Subjt:  DFAGG-RRRVAVELPVVALLGLMGFIAV

XP_023546806.1 formin-like protein 20 [Cucurbita pepo subsp. pepo]1.9e-2772.07Show/hide
Query:  LLILSINVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQDFAGG-RRRVAVELPVV
        +  LSINVV  HG +SS KLD STGGD  +VKCTPCT  + PPPPPPPPKKP  +YC PPPPPPPSSFIY+LGPPGNLYPI +DFAG  RRRVAVEL  V
Subjt:  LLILSINVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQDFAGG-RRRVAVELPVV

Query:  ALLGLMGFIAV
        AL GL+GF+ V
Subjt:  ALLGLMGFIAV

TrEMBL top hitse value%identityAlignment
A0A067FBM4 Uncharacterized protein3.9e-1545.86Show/hide
Query:  QILNLLLILSINVVTIHGLISSNKLDGSTGGDSTVKCTP-CTRYNPPP--------PPPPP---------PKKPPSSYCPPPPPPPPSSFIYMLGPPGNL
        ++L +  +L+  V      + S KLD ST GD  +KCTP CT+  PPP        PPPPP         PKKPPS YCPPPPPP   SFIY+ GPPGNL
Subjt:  QILNLLLILSINVVTIHGLISSNKLDGSTGGDSTVKCTP-CTRYNPPP--------PPPPP---------PKKPPSSYCPPPPPPPPSSFIYMLGPPGNL

Query:  YPIGQDFAGGRRRVAVELPVVALLGLMGFIAVW
        YP+  DF G  +++   LP++   G++GF+A+W
Subjt:  YPIGQDFAGGRRRVAVELPVVALLGLMGFIAVW

A0A0A0KSV7 Uncharacterized protein2.5e-2569.57Show/hide
Query:  ILNLLLILSINVVTIHGLISSNKLDGS-TGGDSTVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQDFAGG-RRRVAVE
        IL+  LILSIN+  IHG ISS KLD      DS+VKCTPCTRY+  PPPPPPPKKPP  YC PPPP PPSSFIYMLGPP NLYPI  DFA   RR VA+E
Subjt:  ILNLLLILSINVVTIHGLISSNKLDGS-TGGDSTVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQDFAGG-RRRVAVE

Query:  LPVVALLGLMGFIAV
        LPVVA  GL+G IA+
Subjt:  LPVVALLGLMGFIAV

A0A2R6PB41 T-cell surface glycoprotein CD8 beta chain like2.7e-1649.19Show/hide
Query:  QILNLLLILSINVVTIHGLISSNKLDGST---GGDSTVKCTPCTRYN------PPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQDFAG
        ++L LL + +     I+GL +  KLD +T     DS +KCT C+  N      PPPPPPPPPKKPP+ YC   PPPPPSSFIY+ GPPGNLYP+   F+G
Subjt:  QILNLLLILSINVVTIHGLISSNKLDGST---GGDSTVKCTPCTRYN------PPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQDFAG

Query:  GRRRVAVELPVVALLGLMGFIAVW
        GR+     LP++   GL+G +A W
Subjt:  GRRRVAVELPVVALLGLMGFIAVW

A0A6J1DRJ1 acrosin-like3.9e-5599.17Show/hide
Query:  MWIQTQILNLLLILSINVVTIHGLISSNKLDGSTGGDSTVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQDFAGGRRR
        MWIQTQILNLLLILSINVVTIHGLISSNKLDGSTGGDSTVKCTPCTRYNPPPPPPPPPKKPPSSYC PPPPPPPSSFIYMLGPPGNLYPIGQDFAGGRRR
Subjt:  MWIQTQILNLLLILSINVVTIHGLISSNKLDGSTGGDSTVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQDFAGGRRR

Query:  VAVELPVVALLGLMGFIAVW
        VAVELPVVALLGLMGFIAVW
Subjt:  VAVELPVVALLGLMGFIAVW

A0A6J1FVH5 probable glycosyltransferase 41.3e-2666.41Show/hide
Query:  MWIQTQILNLLLILSI-------NVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQ
        M IQT+    L ILS        NVV  HG +SS KLD STGGD  +VKCTPCT  + PPPPPPPPKKP  +YC PPPPPPPSSFIY+LGPPGNLYPI +
Subjt:  MWIQTQILNLLLILSI-------NVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQ

Query:  DFAGG-RRRVAVELPVVALLGLMGFIAV
        DFAG  RRRVAVEL  VAL GL+GF+ V
Subjt:  DFAGG-RRRVAVELPVVALLGLMGFIAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G23040.1 hydroxyproline-rich glycoprotein family protein2.2e-1036.72Show/hide
Query:  VVTIHGLISSNKLDGSTGGDST-----------VKCTPCTRYNPPPPPPPPPKKPPSSYCPPP---------------PPPPPSSFIYMLGPPGNLYPIG
        V+ I  L     ++GS+  D++           +KC+P    NPPPP PPPP  PP + CPPP               PPPPP++F+Y+ GPPGNLYP+ 
Subjt:  VVTIHGLISSNKLDGSTGGDST-----------VKCTPCTRYNPPPPPPPPPKKPPSSYCPPP---------------PPPPPSSFIYMLGPPGNLYPIG

Query:  QDF--AGGRRRVAVELPVVALLGLMGFI
        + F  A G+  + V+L  +   G+M F+
Subjt:  QDF--AGGRRRVAVELPVVALLGLMGFI

AT1G70990.1 proline-rich family protein1.2e-1141.73Show/hide
Query:  QTQILNLLLILSINVVTIHGLISSNKLDGSTG---GDSTVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPP-----------PPPPSSFIYMLGPPGNLYP
        +T+ L   L+ ++  +T   +I  N  D ST     +  +KCTPC +  PPP PPPP   PPS  CPPPP           PPPPS++IYM GPPG LYP
Subjt:  QTQILNLLLILSINVVTIHGLISSNKLDGSTG---GDSTVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPP-----------PPPPSSFIYMLGPPGNLYP

Query:  IGQDFAGGRRRVAVELPVVALLGLMGF
        I Q F      V     VV + GL+ F
Subjt:  IGQDFAGGRRRVAVELPVVALLGLMGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGATCCAAACTCAGATCTTGAACTTGCTCTTGATTCTTTCAATCAATGTGGTAACAATCCATGGCTTGATCTCTTCCAACAAGCTTGACGGGTCTACTGGAGGCGA
TTCGACCGTCAAGTGTACGCCGTGCACCCGTTATAATCCACCGCCGCCTCCACCACCCCCACCGAAGAAACCACCGTCGTCGTATTGTCCTCCGCCGCCGCCACCGCCTC
CGTCCTCCTTCATTTACATGCTCGGTCCGCCGGGGAACTTATATCCCATCGGTCAGGACTTCGCCGGTGGCCGGAGGAGGGTGGCCGTGGAGCTGCCGGTGGTTGCTCTC
CTTGGACTGATGGGTTTTATTGCTGTCTGG
mRNA sequenceShow/hide mRNA sequence
ATGTGGATCCAAACTCAGATCTTGAACTTGCTCTTGATTCTTTCAATCAATGTGGTAACAATCCATGGCTTGATCTCTTCCAACAAGCTTGACGGGTCTACTGGAGGCGA
TTCGACCGTCAAGTGTACGCCGTGCACCCGTTATAATCCACCGCCGCCTCCACCACCCCCACCGAAGAAACCACCGTCGTCGTATTGTCCTCCGCCGCCGCCACCGCCTC
CGTCCTCCTTCATTTACATGCTCGGTCCGCCGGGGAACTTATATCCCATCGGTCAGGACTTCGCCGGTGGCCGGAGGAGGGTGGCCGTGGAGCTGCCGGTGGTTGCTCTC
CTTGGACTGATGGGTTTTATTGCTGTCTGG
Protein sequenceShow/hide protein sequence
MWIQTQILNLLLILSINVVTIHGLISSNKLDGSTGGDSTVKCTPCTRYNPPPPPPPPPKKPPSSYCPPPPPPPPSSFIYMLGPPGNLYPIGQDFAGGRRRVAVELPVVAL
LGLMGFIAVW