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MS010465 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010465
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold94:206726..206920
RNA-Seq ExpressionMS010465
SyntenyMS010465
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG47194.1 hypothetical protein EZV62_026488 [Acer yangbiense]3.5e-0441.27Show/hide
Query:  PPQDFIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA
        PPQ   K++ DAA N Q  S G+G+++R+   +++ +S       FSP++AE  A+ EGLRLA
Subjt:  PPQDFIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA

TXG67927.1 hypothetical protein EZV62_009202 [Acer yangbiense]3.5e-0447.62Show/hide
Query:  PPQDFIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA
        PP    K++ DAA     Q  G+GI++RDSC R+ A+S+  I   FSP +AE  AI  GLRLA
Subjt:  PPQDFIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]7.0e-0545.31Show/hide
Query:  PPQD-FIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA
        PP+D  +KV+ DAAC     STGLG+++RD    ++ A   F+P+P +P+ AE+R I E L+LA
Subjt:  PPQD-FIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.1e-0546.67Show/hide
Query:  IKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLALA
        +K++ DAAC G   ST  G ++RDS   ++AA+   +P P SP+LAE+R I EGL+ A A
Subjt:  IKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLALA

XP_030930680.1 uncharacterized protein LOC115956442 [Quercus lobata]6.0e-0442.19Show/hide
Query:  PPQDFIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLAL
        PP  F KV+VD A +   + + +G+++RDS   +IAAS   +P PFS  + E  A+ EG+ LAL
Subjt:  PPQDFIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLAL

TrEMBL top hitse value%identityAlignment
A0A5C7GQX3 RNase H domain-containing protein1.7e-0441.27Show/hide
Query:  PPQDFIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA
        PPQ   K++ DAA N Q  S G+G+++R+   +++ +S       FSP++AE  A+ EGLRLA
Subjt:  PPQDFIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA

A0A5C7IF08 RNase H domain-containing protein1.7e-0447.62Show/hide
Query:  PPQDFIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA
        PP    K++ DAA     Q  G+GI++RDSC R+ A+S+  I   FSP +AE  AI  GLRLA
Subjt:  PPQDFIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA

A0A6J1BQ49 uncharacterized protein LOC1110047863.4e-0545.31Show/hide
Query:  PPQD-FIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA
        PP+D  +KV+ DAAC     STGLG+++RD    ++ A   F+P+P +P+ AE+R I E L+LA
Subjt:  PPQD-FIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLA

A0A6J1DX30 uncharacterized protein LOC1110248742.0e-0546.67Show/hide
Query:  IKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLALA
        +K++ DAAC G   ST  G ++RDS   ++AA+   +P P SP+LAE+R I EGL+ A A
Subjt:  IKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLALA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCGCCTCAGGATTTCATTAAGGTATCTGTTGATGCCGCATGCAATGGTCAAATTCAATCAACGGGGCTAGGTATTCTCCTTCGTGACAGTTGCAGGCGAATTATTGCAGC
TTCTTTGACTTTCATTCCAATTCCTTTTTCTCCCATTCTCGCTGAAGTTAGGGCAATTTATGAAGGTCTGCGTCTGGCTCTTGCC
mRNA sequenceShow/hide mRNA sequence
CCGCCTCAGGATTTCATTAAGGTATCTGTTGATGCCGCATGCAATGGTCAAATTCAATCAACGGGGCTAGGTATTCTCCTTCGTGACAGTTGCAGGCGAATTATTGCAGC
TTCTTTGACTTTCATTCCAATTCCTTTTTCTCCCATTCTCGCTGAAGTTAGGGCAATTTATGAAGGTCTGCGTCTGGCTCTTGCC
Protein sequenceShow/hide protein sequence
PPQDFIKVSVDAACNGQIQSTGLGILLRDSCRRIIAASLTFIPIPFSPILAEVRAIYEGLRLALA