; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010484 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010484
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein TAPETUM DETERMINANT 1-like
Genome locationscaffold35:9496..9828
RNA-Seq ExpressionMS010484
SyntenyMS010484
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026827.1 hypothetical protein SDJN02_10834, partial [Cucurbita argyrosperma subsp. argyrosperma]8.8e-4074.77Show/hide
Query:  YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPI
        + P GN QC+L+N+TI+Q  TGFQIHGMTEW  T+SN C CSQS+VKLDC GFQTT SIDP ILAI+D+ECLVNNG PIF+S PITFTYA NP F FKPI
Subjt:  YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPI

Query:  SSQIACS
        SSQIACS
Subjt:  SSQIACS
XP_008440637.1 PREDICTED: protein TAPETUM DETERMINANT 1-like [Cucumis melo]4.2e-4277.57Show/hide
Query:  YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPI
        +  +GNCQC LNN+TISQK TGFQIHGMTEW VTI+NNC CSQSD+KLDC GF TTLSIDP+IL+ISD+ECLVNNG+PIF+SKPITF YA  P F FKPI
Subjt:  YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPI

Query:  SSQIACS
        SSQI+CS
Subjt:  SSQIACS
XP_022962948.1 uncharacterized protein At1g05835-like [Cucurbita moschata]5.7e-3977.45Show/hide
Query:  NCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIA
        N QC+L+N+TI Q  TGFQIHGMTEW  T+SNNC CSQS+VKLDC GFQTT SIDP ILAI+D+ECLVNNG PIF+S PITFTYA NP F FKPISSQIA
Subjt:  NCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIA

Query:  CS
        CS
Subjt:  CS
XP_031742370.1 uncharacterized protein At1g05835-like [Cucumis sativus]3.2e-4278.85Show/hide
Query:  SGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQ
        +GNCQC+LNN+ ISQ  TGFQIHGMTEW+VTI+NNC CSQSD+KLDC GF TTLSIDP+ILAISDSECLVNNGQPIF+S+PITF YA +P F FKP+SSQ
Subjt:  SGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQ

Query:  IACS
        I+CS
Subjt:  IACS
XP_038881121.1 uncharacterized protein At1g05835-like [Benincasa hispida]6.1e-4176.92Show/hide
Query:  SGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQ
        +GNCQC LNN+TISQ+ TGFQIHGMTEW+VTISNNC CSQS+VK+DC GFQTT SIDP+ILA+ D+ECLVNNG PIF+S PITF+YA +P F FKPISSQ
Subjt:  SGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQ

Query:  IACS
        I+CS
Subjt:  IACS
TrEMBL top hitse value%identityAlignment
A0A0A0KLZ6 Uncharacterized protein1.6e-4278.85Show/hide
Query:  SGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQ
        +GNCQC+LNN+ ISQ  TGFQIHGMTEW+VTI+NNC CSQSD+KLDC GF TTLSIDP+ILAISDSECLVNNGQPIF+S+PITF YA +P F FKP+SSQ
Subjt:  SGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQ

Query:  IACS
        I+CS
Subjt:  IACS
A0A1S3B1L8 protein TAPETUM DETERMINANT 1-like2.0e-4277.57Show/hide
Query:  YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPI
        +  +GNCQC LNN+TISQK TGFQIHGMTEW VTI+NNC CSQSD+KLDC GF TTLSIDP+IL+ISD+ECLVNNG+PIF+SKPITF YA  P F FKPI
Subjt:  YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPI

Query:  SSQIACS
        SSQI+CS
Subjt:  SSQIACS
A0A5D3CMA8 Protein TAPETUM DETERMINANT 1-like2.0e-4277.57Show/hide
Query:  YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPI
        +  +GNCQC LNN+TISQK TGFQIHGMTEW VTI+NNC CSQSD+KLDC GF TTLSIDP+IL+ISD+ECLVNNG+PIF+SKPITF YA  P F FKPI
Subjt:  YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPI

Query:  SSQIACS
        SSQI+CS
Subjt:  SSQIACS
A0A6J1HGA0 uncharacterized protein At1g05835-like2.8e-3977.45Show/hide
Query:  NCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIA
        N QC+L+N+TI Q  TGFQIHGMTEW  T+SNNC CSQS+VKLDC GFQTT SIDP ILAI+D+ECLVNNG PIF+S PITFTYA NP F FKPISSQIA
Subjt:  NCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIA

Query:  CS
        CS
Subjt:  CS
A0A6J1KP98 protein TAPETUM DETERMINANT 1-like2.4e-3571.84Show/hide
Query:  GNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQI
        GNCQC  N++ I Q  +GFQIHGMTEW VTISN C CSQS+VKLDC GFQTT SIDP++LA++DSECLVNNG PIF S  ITFTYA +P F FK ISSQI
Subjt:  GNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQI

Query:  ACS
         CS
Subjt:  ACS
SwissProt top hitse value%identityAlignment
Q1G3T1 TPD1 protein homolog 12.5e-0527.08Show/hide
Query:  CYLNNLTISQKETGFQIHGMTEWRVTISNNC--HCSQSDVKLDCTGFQTTLSIDPTILAISD-SECLVNNGQPIFSSKPITFTYASNPSFPFKPIS
        C  +++ + Q  T     G+  + V I N+C   C+ +++ + C  F +   ++P +    D  +CLVN+GQP+   + ++F YA++ S+P    S
Subjt:  CYLNNLTISQKETGFQIHGMTEWRVTISNNC--HCSQSDVKLDCTGFQTTLSIDPTILAISD-SECLVNNGQPIFSSKPITFTYASNPSFPFKPIS
Arabidopsis top hitse value%identityAlignment
AT1G32583.1 FUNCTIONS IN: molecular_function unknown1.8e-0627.08Show/hide
Query:  CYLNNLTISQKETGFQIHGMTEWRVTISNNC--HCSQSDVKLDCTGFQTTLSIDPTILAISD-SECLVNNGQPIFSSKPITFTYASNPSFPFKPIS
        C  +++ + Q  T     G+  + V I N+C   C+ +++ + C  F +   ++P +    D  +CLVN+GQP+   + ++F YA++ S+P    S
Subjt:  CYLNNLTISQKETGFQIHGMTEWRVTISNNC--HCSQSDVKLDCTGFQTTLSIDPTILAISD-SECLVNNGQPIFSSKPITFTYASNPSFPFKPIS
AT4G32090.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein3.4e-1334Show/hide
Query:  GNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQI
        G C C    + I    TG +I G  EW+VT+ N C+C Q  V L C GF     + P +L    + CL+  G  + +     FTYA  P + F+P+ S++
Subjt:  GNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATTATCATTTTTATTTTCCATCAGGGAATTGCCAGTGTTATTTGAACAACCTAACAATCAGCCAAAAGGAAACTGGATTTCAGATCCATGGAATGACAGAATGGAGAGT
CACAATAAGCAACAATTGCCATTGTTCTCAATCGGACGTGAAATTGGACTGCACTGGATTTCAAACTACATTAAGCATTGATCCCACCATCCTAGCCATTTCTGACTCTG
AGTGTTTGGTCAACAATGGGCAGCCAATTTTCAGTTCCAAACCCATCACTTTCACTTATGCATCGAACCCATCATTCCCTTTCAAGCCCATCTCTTCGCAAATTGCTTGT
TCT
mRNA sequenceShow/hide mRNA sequence
TATTATCATTTTTATTTTCCATCAGGGAATTGCCAGTGTTATTTGAACAACCTAACAATCAGCCAAAAGGAAACTGGATTTCAGATCCATGGAATGACAGAATGGAGAGT
CACAATAAGCAACAATTGCCATTGTTCTCAATCGGACGTGAAATTGGACTGCACTGGATTTCAAACTACATTAAGCATTGATCCCACCATCCTAGCCATTTCTGACTCTG
AGTGTTTGGTCAACAATGGGCAGCCAATTTTCAGTTCCAAACCCATCACTTTCACTTATGCATCGAACCCATCATTCCCTTTCAAGCCCATCTCTTCGCAAATTGCTTGT
TCT
Protein sequenceShow/hide protein sequence
YYHFYFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIAC
S