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MS010493 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010493
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase RHA2B-like
Genome locationscaffold35:69025..69297
RNA-Seq ExpressionMS010493
SyntenyMS010493
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008440648.1 PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo]2.2e-4492.31Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
        LIE++NPTIRFSNK+T S ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDE
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE

XP_022132528.1 E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]9.4e-48100Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
        LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE

XP_022963436.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata]1.4e-4695.6Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
        LIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDE
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE

XP_023003552.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita maxima]5.2e-4694.51Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
        LIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCR KVLPDD+VAGYHRLRDRVEYDGSDE
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE

XP_038883588.1 E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]1.1e-4595.6Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
        LIEE+NPTIRFSNKLTSS ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDE
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE

TrEMBL top hitse value%identityAlignment
A0A0A0KM08 RING-type domain-containing protein1.0e-4492.31Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
        LIE++NPTIRFSNK+T S ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDE
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE

A0A5A7SYH1 Putative E3 ubiquitin-protein ligase RHA2B1.0e-4492.31Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
        LIE++NPTIRFSNK+T S ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDE
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE

A0A6J1BWI1 E3 ubiquitin-protein ligase RHA2B-like4.6e-48100Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
        LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE

A0A6J1HG49 E3 ubiquitin-protein ligase RHA2B-like isoform X16.6e-4795.6Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
        LIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDE
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE

A0A6J1KMW2 E3 ubiquitin-protein ligase RHA2B-like isoform X12.5e-4694.51Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE
        LIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCR KVLPDD+VAGYHRLRDRVEYDGSDE
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE

SwissProt top hitse value%identityAlignment
Q0VD51 E3 ubiquitin-protein ligase RNF131.9e-1152Show/hide
Query:  DQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP
        D CA+CL E+E+GDK+R L C+H +H  C+D WL     TCP+C+ KV+P
Subjt:  DQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP

Q8LPN7 E3 ubiquitin-protein ligase RING1-like1.7e-1243.94Show/hide
Query:  PTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

Q9XF92 Brassinosteroid-responsive RING protein 11.9e-1146.75Show/hide
Query:  LIEERNPTIRFSNKLTSSPAD---QCAVCLSEFEEGDKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDV
        LI E  P I+F  +LT+S  D    CAVCL EFE   ++R L+ C H FH+ CLD W+     TCPLCR+  +PD++
Subjt:  LIEERNPTIRFSNKLTSSPAD---QCAVCLSEFEEGDKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDV

Q9ZT50 E3 ubiquitin-protein ligase RHA2A2.7e-1354.39Show/hide
Query:  CAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHR
        C VCLS+ +EG++VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHR

Q9ZU51 E3 ubiquitin-protein ligase RHA2B2.7e-1345.71Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP
        L ++ N    FS + + + A  C VCLS+ + G++VRKL C H FHK CL+ WL+     CPLCRS +LP
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A1.9e-1454.39Show/hide
Query:  CAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHR
        C VCLS+ +EG++VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHR

AT2G01150.1 RING-H2 finger protein 2B1.9e-1445.71Show/hide
Query:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP
        L ++ N    FS + + + A  C VCLS+ + G++VRKL C H FHK CL+ WL+     CPLCRS +LP
Subjt:  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP

AT3G19950.1 RING/U-box superfamily protein1.2e-1343.94Show/hide
Query:  PTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

AT3G62690.1 AtL52.8e-1348.53Show/hide
Query:  ERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKL-QCNHTFHKDCLDNWLKLCFATCPLCRSKVLP
        E+ P   +S K   SP ++C+VCLSEFEE D+ R L +C H FH DC+D W +   ++CPLCR+ V P
Subjt:  ERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKL-QCNHTFHKDCLDNWLKLCFATCPLCRSKVLP

AT5G45290.1 RING/U-box superfamily protein1.2e-1342.86Show/hide
Query:  IRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYH
        I+   K  S    QC +CL E+EE D +R L C+H FHK C+D WLK     CPLCR  +   D  +  H
Subjt:  IRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGATCGAGGAGAGGAATCCGACGATTCGATTCTCCAATAAGCTAACTTCGAGTCCCGCCGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGCGATAAGGTACG
GAAATTACAATGCAATCACACTTTTCACAAGGACTGCCTCGACAATTGGTTGAAACTCTGTTTCGCTACCTGTCCGCTTTGCCGGAGTAAGGTTCTGCCGGACGATGTGG
TCGCCGGCTACCACAGGCTGCGGGACCGCGTGGAGTACGATGGCAGCGACGAG
mRNA sequenceShow/hide mRNA sequence
TTGATCGAGGAGAGGAATCCGACGATTCGATTCTCCAATAAGCTAACTTCGAGTCCCGCCGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGCGATAAGGTACG
GAAATTACAATGCAATCACACTTTTCACAAGGACTGCCTCGACAATTGGTTGAAACTCTGTTTCGCTACCTGTCCGCTTTGCCGGAGTAAGGTTCTGCCGGACGATGTGG
TCGCCGGCTACCACAGGCTGCGGGACCGCGTGGAGTACGATGGCAGCGACGAG
Protein sequenceShow/hide protein sequence
LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE