CuGenDBv2

Gene ID	MS010497
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Translation initiation factor IF-2, putative isoform 1
Genome location	scaffold35:96848..99324
RNA-Seq Expression	MS010497
Synteny	MS010497
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6604007.1 hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-104

85.17

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Query:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ
        MARRKAKK+ KK SPSP+REA+    NE K E+QA LVS+EDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFFEEKLP+LSIS  GEQ
Subjt:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ

Query:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI
        GEIEVQWKD   ELHT PADGIDIHASLLHRLS AYPNCSAGM+S NGFEFSSKSVKTN FNVENLQIP+F LEEPSD+M+LGMPD+LQTPGV NQRLSI
Subjt:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        GMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIH
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

KAG7034170.1 hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-102

83.82

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Query:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ
        MARRKAKK+ KK SPSPVREA+    NE K E+QA LVS+EDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFFEEKLP+LSIS  GEQ
Subjt:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ

Query:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPG-----VCN
        GEIEVQWKD   ELHT PADGIDIHASLLHRLS AYPNCSAGM+S NGFEFSSKSVKTN FNVENLQIP+F LEEPSD+M+LGMPD+LQTPG     V N
Subjt:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPG-----VCN

Query:  QRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        QRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIH
Subjt:  QRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

XP_022133198.1 uncharacterized protein LOC111005854 [Momordica charantia]

7.9e-123

100

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

XP_022978547.1 uncharacterized protein LOC111478496 [Cucurbita maxima]

5.9e-102

83.9

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Query:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ
        MARRKAKK+ KK SPSPVREA+    NE K E+QA LVS+EDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFF EKLP+LSIS  GEQ
Subjt:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ

Query:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI
        GEIEVQWKD   ELHT PADGIDIHASLLHRLS AYPNCSAG++S NGFEFSSKSVKTN FNVENLQIP+FVLEEPSD+M+LGMPD+LQTPG  NQRLSI
Subjt:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        GMTPKTRRLPKPGE++VSIHGSPLGVY+E NMEAIH
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

XP_023543921.1 uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo]

1.8e-103

84.75

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Query:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ
        MARRKAKK+ KK SPSPVREA+    NE K E+QA LVS+EDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFFEEKLP+LSIS  GEQ
Subjt:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ

Query:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI
        GEIEVQWK+   ELHT PADGIDIHASLLHRLS AYPNCSAGM+S NGFEFSSKSVKTN FNVENLQIP+F LEEPSD+M+LGMPD+LQTPGV NQRLSI
Subjt:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        GMTPKTRRLPKPGE+LVSIHGSPLGVY+E+NMEAIH
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B1M1 uncharacterized protein LOC103485008

5.9e-100

84.48

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        MARRKAKKT KK +PSPV EA++E+         ++EDVERHAAAIRAIRDVEI RLITELRLLRSYFNKEQLQTP+LQFFEEKLP LSIS TGEQGEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        VQWKD   EL T PADGIDIHASLLHRLSIAYPNCSAGM+S NGFEFSSKSVKTN F VENLQIP+F LEEPSD+M+LGMPDILQTPGV NQRLSIGMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A5A7SXV4 Translation initiation factor IF-2, putative isoform 1

2.0e-100

82.91

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        MARRKAKKT KK SPS  R A++E+   ++    S+EDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFFEEKLP+LSIS  G+QGEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        VQWKD   ELHT PADG+DIHASLLHRLS AYP CSAGM+S NGFEFSSKSVKTN FN ENLQIP+FVLEEPSD+M+LGMPDILQTPG+ NQRLSIGMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGM
        KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG+
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGM

A0A5D3CLG2 Uncharacterized protein

5.9e-100

84.48

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        MARRKAKKT KK +PSPV EA++E+         ++EDVERHAAAIRAIRDVEI RLITELRLLRSYFNKEQLQTP+LQFFEEKLP LSIS TGEQGEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        VQWKD   EL T PADGIDIHASLLHRLSIAYPNCSAGM+S NGFEFSSKSVKTN F VENLQIP+F LEEPSD+M+LGMPDILQTPGV NQRLSIGMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A6J1BYE7 uncharacterized protein LOC111005854

3.8e-123

100

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A6J1ILD3 uncharacterized protein LOC111478496

2.8e-102

83.9

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Query:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ
        MARRKAKK+ KK SPSPVREA+    NE K E+QA LVS+EDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFF EKLP+LSIS  GEQ
Subjt:  MARRKAKKTAKKLSPSPVREAE----NESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQ

Query:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI
        GEIEVQWKD   ELHT PADGIDIHASLLHRLS AYPNCSAG++S NGFEFSSKSVKTN FNVENLQIP+FVLEEPSD+M+LGMPD+LQTPG  NQRLSI
Subjt:  GEIEVQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        GMTPKTRRLPKPGE++VSIHGSPLGVY+E NMEAIH
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G39630.1 unknown protein

1.9e-50

49.36

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Query:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE
        M +RKAK+  K       R  E   + EE+     +E+VER  AAIRAIRDVEIE+++T LRLLRSYF +EQL TP+L FF+E LP+LSIS   E GEIE
Subjt:  MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIE

Query:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP
        ++W+D  G+      +G+D++ S+L RLS+ + +  +   S+ G++    +VK N    +N Q+ + V +  S++ ML   D  QTPGV  QRLS GMTP
Subjt:  VQWKDAAGELHTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTP

Query:  KTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIH
        KT RLPK GEM++S+HGSPLGVYKED NM AI+
Subjt:  KTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIH

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGAGGCGAAAGGCGAAGAAAACAGCTAAGAAGTTGAGCCCTTCTCCTGTGCGTGAAGCAGAGAATGAGTCAAAACCTGAGGAGCAAGCACCTTTGGTGTCCAACGA
GGATGTTGAGCGGCATGCTGCTGCAATTCGTGCCATTCGGGATGTGGAAATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGC
AAACTCCTATATTGCAATTTTTCGAAGAAAAACTTCCAAACTTGTCCATTTCAGCAACAGGCGAACAAGGGGAAATAGAAGTGCAATGGAAGGATGCAGCGGGAGAATTA
CACACTAAGCCTGCTGACGGAATAGACATACATGCTTCTCTCCTGCATCGCTTGTCCATAGCTTATCCTAACTGCTCTGCCGGAATGCAATCTATGAATGGTTTTGAATT
TTCCAGTAAATCAGTGAAAACAAATGCTTTCAATGTCGAGAACTTGCAAATTCCGAGCTTCGTTTTGGAGGAGCCTTCGGATAGTATGATGCTTGGCATGCCAGACATTC
TCCAAACTCCCGGGGTATGCAACCAAAGATTGTCCATTGGGATGACACCGAAAACCCGAAGGCTGCCGAAGCCTGGTGAGATGCTTGTATCTATCCATGGATCTCCCCTT
GGTGTTTACAAGGAAGACAACATGGAAGCAATACATGGTATG

mRNA sequence

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Protein sequence

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MARRKAKKTAKKLSPSPVREAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIEVQWKDAAGEL
HTKPADGIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLEEPSDSMMLGMPDILQTPGVCNQRLSIGMTPKTRRLPKPGEMLVSIHGSPL
GVYKEDNMEAIHGM

MS010497 (gene) of Bitter gourd (TR) v1 genome