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MS010549 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010549
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
Genome locationscaffold35:469997..470195
RNA-Seq ExpressionMS010549
SyntenyMS010549
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142727.1 putative pentatricopeptide repeat-containing protein At3g47840 [Cucumis sativus]5.0e-1977.27Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG
        ANI+ AKGKW+E ANIRMLMKSKGVVKEPGWSS+KVKDS+ AFV   +SHPQGEDIY++ E LASG
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG

XP_022157247.1 putative pentatricopeptide repeat-containing protein At3g47840 [Momordica charantia]7.7e-2084.62Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLAS
        ANIY AKGKWRE ANIRMLMKSKGVVKEPGWSSIKVK SI AFV   +SHPQGEDI+SM ELLAS
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLAS

XP_022978429.1 putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucurbita maxima]7.2e-1875.76Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG
        ANI+ AKGKW+E ANIRM+MKSKGVVKEPGWSSIK+KDS+ AFV   +S PQGEDIY M E LASG
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG

XP_022978431.1 putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 [Cucurbita maxima]7.2e-1875.76Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG
        ANI+ AKGKW+E ANIRM+MKSKGVVKEPGWSSIK+KDS+ AFV   +S PQGEDIY M E LASG
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG

XP_038887347.1 putative pentatricopeptide repeat-containing protein At3g47840 [Benincasa hispida]1.0e-1980.3Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG
        ANI+ AKGKW+E ANIRMLMKSKGVVKEPGWSSIK+KDSI AFV   +SHP+GEDIYSM E LASG
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG

TrEMBL top hitse value%identityAlignment
A0A0A0KXW2 Uncharacterized protein2.4e-1977.27Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG
        ANI+ AKGKW+E ANIRMLMKSKGVVKEPGWSS+KVKDS+ AFV   +SHPQGEDIY++ E LASG
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG

A0A1S4DWM7 putative pentatricopeptide repeat-containing protein At3g478401.3e-1775.38Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLAS
        ANI+ AKGKW+E ANIRMLMKSKGVVKEPGWSS+KVKDS+ AFV   +SHPQ EDIY++ E LAS
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLAS

A0A6J1DSK9 putative pentatricopeptide repeat-containing protein At3g478403.7e-2084.62Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLAS
        ANIY AKGKWRE ANIRMLMKSKGVVKEPGWSSIKVK SI AFV   +SHPQGEDI+SM ELLAS
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLAS

A0A6J1IMM7 putative pentatricopeptide repeat-containing protein At3g47840 isoform X23.5e-1875.76Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG
        ANI+ AKGKW+E ANIRM+MKSKGVVKEPGWSSIK+KDS+ AFV   +S PQGEDIY M E LASG
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG

A0A6J1IU19 putative pentatricopeptide repeat-containing protein At3g47840 isoform X13.5e-1875.76Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG
        ANI+ AKGKW+E ANIRM+MKSKGVVKEPGWSSIK+KDS+ AFV   +S PQGEDIY M E LASG
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG

SwissProt top hitse value%identityAlignment
O64766 Pentatricopeptide repeat-containing protein At2g35030, mitochondrial7.8e-0750.85Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKV-KDSIAFVVRYQSHPQGEDIYSM
        +NIY A GK  E A +RM MK KG+ K+PG S +KV K +  FVV  +SHPQ E + S+
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKV-KDSIAFVVRYQSHPQGEDIYSM

P0C899 Putative pentatricopeptide repeat-containing protein At3g491421.1e-0846.03Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELL
        +NIY   G+W E  NIR +MKSKG+ K PG S+++V   I  F+V  +SHPQ ++IY   ++L
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELL

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic1.0e-0641.94Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSIA--FVVRYQSHPQGEDIYSMSE
        +NIY + G+W E A  R L+  KG+ K PG SSI++ DS+   F++  + HP+  +IY M E
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSIA--FVVRYQSHPQGEDIYSMSE

Q9LW32 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial1.3e-0636.84Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIY
        ++IY   G+W++   +RM+MK++G+VK PG+S +++   +  F++  + HPQ E IY
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIY

Q9STS9 Putative pentatricopeptide repeat-containing protein At3g478406.0e-1559.09Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG
        ANIY + G   E AN+R  MK+KGV+KEPGWSSIK+KD + AFV   + HPQ EDIY++ EL  SG
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.2e-0841.94Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSIA--FVVRYQSHPQGEDIYSMSE
        +NIY + G+W E A  R L+  KG+ K PG SSI++ DS+   F++  + HP+  +IY M E
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSIA--FVVRYQSHPQGEDIYSMSE

AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein5.5e-0850.85Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKV-KDSIAFVVRYQSHPQGEDIYSM
        +NIY A GK  E A +RM MK KG+ K+PG S +KV K +  FVV  +SHPQ E + S+
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKV-KDSIAFVVRYQSHPQGEDIYSM

AT3G26782.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.5e-0836.84Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIY
        ++IY   G+W++   +RM+MK++G+VK PG+S +++   +  F++  + HPQ E IY
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIY

AT3G47840.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.2e-1659.09Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG
        ANIY + G   E AN+R  MK+KGV+KEPGWSSIK+KD + AFV   + HPQ EDIY++ EL  SG
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELLASG

AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.7e-1046.03Show/hide
Query:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELL
        +NIY   G+W E  NIR +MKSKG+ K PG S+++V   I  F+V  +SHPQ ++IY   ++L
Subjt:  ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSI-AFVVRYQSHPQGEDIYSMSELL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAAACATTTACGATGCCAAAGGAAAGTGGAGGGAAACGGCAAATATAAGAATGTTAATGAAATCAAAGGGGGTGGTGAAGGAGCCAGGATGGTCTTCAATAAAGGTTAA
GGATAGCATTGCGTTTGTTGTTAGATATCAGTCTCATCCACAAGGAGAAGACATATATAGTATGTCAGAGTTGTTGGCTTCGGGA
mRNA sequenceShow/hide mRNA sequence
GCAAACATTTACGATGCCAAAGGAAAGTGGAGGGAAACGGCAAATATAAGAATGTTAATGAAATCAAAGGGGGTGGTGAAGGAGCCAGGATGGTCTTCAATAAAGGTTAA
GGATAGCATTGCGTTTGTTGTTAGATATCAGTCTCATCCACAAGGAGAAGACATATATAGTATGTCAGAGTTGTTGGCTTCGGGA
Protein sequenceShow/hide protein sequence
ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSIAFVVRYQSHPQGEDIYSMSELLASG