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MS010624 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010624
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase RNF181 homolog
Genome locationscaffold35:1066582..1066965
RNA-Seq ExpressionMS010624
SyntenyMS010624
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603894.1 hypothetical protein SDJN03_04503, partial [Cucurbita argyrosperma subsp. sororia]5.4e-3362.18Show/hide
Query:  GIKD--------ESHVKQRAKKEGCEALAHPTLYD-AVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHEC--QKTCPICQFWLRDDDGQTT
        GIKD        +S   +RAK+EGCE  AHPTL D A+ REWCSVCLS VME + +++  LPC HEFHKIC++RWFHEC  QKTC IC+FW+ D+D Q T
Subjt:  GIKD--------ESHVKQRAKKEGCEALAHPTLYD-AVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHEC--QKTCPICQFWLRDDDGQTT

Query:  EVLTEEMVIWFTSFHVVGY
        EVLTEEMVIW TS HV+ Y
Subjt:  EVLTEEMVIWFTSFHVVGY

XP_022132660.1 E3 ubiquitin-protein ligase RNF181 homolog [Momordica charantia]1.2e-6994.12Show/hide
Query:  MVYRKIISSFYNFVVLKLYPGIKD--------ESHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQK
        MVYRKIISSFYNFVVLKLYPGIKD        ESHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQK
Subjt:  MVYRKIISSFYNFVVLKLYPGIKD--------ESHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQK

Query:  TCPICQFWLRDDDGQTTEVLTEEMVIWFTSFHVVGY
        TCPICQFWLRDDDGQTTEVLTEEMVIWFTSFHVVGY
Subjt:  TCPICQFWLRDDDGQTTEVLTEEMVIWFTSFHVVGY

XP_022977421.1 uncharacterized protein LOC111477769 isoform X1 [Cucurbita maxima]8.9e-3662.3Show/hide
Query:  NFVVLKLYPGIKD--ESHVKQRAKKEGCEALAHPTLYD-AVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHEC--QKTCPICQFWLRDDDG
        +F V K++  + D  +S+  +RAK+EGCE  AHPTL D A+ REWCSVC S VME + +++  LPC HEFHKIC++RWFHEC  QKTCPICQFW+RD+D 
Subjt:  NFVVLKLYPGIKD--ESHVKQRAKKEGCEALAHPTLYD-AVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHEC--QKTCPICQFWLRDDDG

Query:  QTTEVLTEEMVIWFTSFHVVGY
        Q TEVLTEEMVIW TS HV+ Y
Subjt:  QTTEVLTEEMVIWFTSFHVVGY

XP_031276738.1 E3 ubiquitin-protein ligase At1g12760 [Pistacia vera]1.7e-2345.65Show/hide
Query:  MVYRKIISSFYNFVVLKLYPGIKD-------ESHVKQRAK--KEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQ
        MV +K+ISS YN ++ +  P  K         S V+++A+       +LA  +L +    E C VCLS + EGE+ RV  LPCLHEFH+ CI RWF+ C 
Subjt:  MVYRKIISSFYNFVVLKLYPGIKD-------ESHVKQRAK--KEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQ

Query:  KTCPICQFWLRDDDG-QTTEVLTEEMVIWFTSFHVVGY
        KTCPIC+F +++D+     E  TEEMVIWF+SFHV G+
Subjt:  KTCPICQFWLRDDDG-QTTEVLTEEMVIWFTSFHVVGY

XP_038883680.1 E3 ubiquitin-protein ligase znrf3-like [Benincasa hispida]1.1e-3861.76Show/hide
Query:  VYRKIISSFYNFVVLKLYPGIKD--------ESHVKQRAKKEGCEALAHPTLYD-AVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHEC--
        + +KIISS +NF+ L+  PGIK+         S   QRAK++GCE   HPTL   A+  EWCSVCLSKVME EE+RV  LPC HE HKIC++RWFH+C  
Subjt:  VYRKIISSFYNFVVLKLYPGIKD--------ESHVKQRAKKEGCEALAHPTLYD-AVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHEC--

Query:  QKTCPICQFWLRDDDGQTTEVLTEEMVIWFTSFHVV
        QKTCPIC+FW+RD+D QTTEVLTEEMVIWFT F V+
Subjt:  QKTCPICQFWLRDDDGQTTEVLTEEMVIWFTSFHVV

TrEMBL top hitse value%identityAlignment
A0A2I4FD42 E3 ubiquitin-protein ligase RNF165-like1.8e-2140Show/hide
Query:  MVYRKIISSFYNFVVLKLYPGIKDESHVKQRAKK-EGCEALAHPTLYDAVGR----------EWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHE
        M +RK++S  Y+F+  ++ P +K       R  K E  + +         G           E C VCLS++ +G+++R   LPCLHEFHK+C+ RWF  
Subjt:  MVYRKIISSFYNFVVLKLYPGIKDESHVKQRAKK-EGCEALAHPTLYDAVGR----------EWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHE

Query:  CQKTCPICQFWLRDDDG-QTTEVLTEEMVIWFTSFHVVGY
        C+KTCP+C+F +  +D     EVLT+EMVIWF+SFHV G+
Subjt:  CQKTCPICQFWLRDDDG-QTTEVLTEEMVIWFTSFHVVGY

A0A4S4DKH4 RING-type domain-containing protein2.3e-2144.44Show/hide
Query:  MVYRKIISSFYNFVVLKLYPGIKDESHVKQRA------KKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTC
        MV +K ISS    + LK    IK  S  +  A       KEG     H     A+  E C VCL ++ EGE+ RV  LPC HEFH+ C+ RW + CQKTC
Subjt:  MVYRKIISSFYNFVVLKLYPGIKDESHVKQRA------KKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTC

Query:  PICQFWLRDDD-GQTTEVLTEEMVIWFTSFHVVGY
        P+C+F + D++  +  E LT+EMVIWF+SFHV G+
Subjt:  PICQFWLRDDD-GQTTEVLTEEMVIWFTSFHVVGY

A0A5B6YSP6 Putative E3 ubiquitin-protein ligase RHA2A (Fragment)2.5e-2344.53Show/hide
Query:  MVYRKIISSFYNFVVLKLYPGIKD-------ESHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVME-GEESRVLRLPCLHEFHKICIKRWFHECQK
        MV +K++S   +F+ L+    IKD       ES+V  + K+   E        +A+  E C VCLS++ E GE++RV  LPCLHEFH++C+ RWF+ C K
Subjt:  MVYRKIISSFYNFVVLKLYPGIKD-------ESHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVME-GEESRVLRLPCLHEFHKICIKRWFHECQK

Query:  TCPICQFWLRDDDG-QTTEVLTEEMVIWFTSFHVVGY
        TCP+C+F + D++  Q  E LTEEMVIWF+SFH  G+
Subjt:  TCPICQFWLRDDDG-QTTEVLTEEMVIWFTSFHVVGY

A0A6J1BT35 E3 ubiquitin-protein ligase RNF181 homolog6.0e-7094.12Show/hide
Query:  MVYRKIISSFYNFVVLKLYPGIKD--------ESHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQK
        MVYRKIISSFYNFVVLKLYPGIKD        ESHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQK
Subjt:  MVYRKIISSFYNFVVLKLYPGIKD--------ESHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQK

Query:  TCPICQFWLRDDDGQTTEVLTEEMVIWFTSFHVVGY
        TCPICQFWLRDDDGQTTEVLTEEMVIWFTSFHVVGY
Subjt:  TCPICQFWLRDDDGQTTEVLTEEMVIWFTSFHVVGY

A0A6J1IJV3 uncharacterized protein LOC111477769 isoform X14.3e-3662.3Show/hide
Query:  NFVVLKLYPGIKD--ESHVKQRAKKEGCEALAHPTLYD-AVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHEC--QKTCPICQFWLRDDDG
        +F V K++  + D  +S+  +RAK+EGCE  AHPTL D A+ REWCSVC S VME + +++  LPC HEFHKIC++RWFHEC  QKTCPICQFW+RD+D 
Subjt:  NFVVLKLYPGIKD--ESHVKQRAKKEGCEALAHPTLYD-AVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHEC--QKTCPICQFWLRDDDG

Query:  QTTEVLTEEMVIWFTSFHVVGY
        Q TEVLTEEMVIW TS HV+ Y
Subjt:  QTTEVLTEEMVIWFTSFHVVGY

SwissProt top hitse value%identityAlignment
Q0V9R0 E3 ubiquitin-protein ligase arkadia6.2e-0841.1Show/hide
Query:  SHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ
        S  K  +K++G EA    T       E C++CLS + EGE+ R  RLPC+H FH++C+ +W     K CPIC+
Subjt:  SHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ

Q66J97 E3 ubiquitin-protein ligase arkadia-C1.1e-0741.1Show/hide
Query:  SHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ
        S  K  +K++G EA    T       E C++CLS + EGE+ R  RLPC+H FH++C+ +W     K CPIC+
Subjt:  SHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ

Q68DV7 E3 ubiquitin-protein ligase RNF433.7e-0844.23Show/hide
Query:  CSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQFWLRDDD
        C++CL +  EG+E RV  + CLHEFH+ C+  W H+  +TCP+C F + + D
Subjt:  CSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQFWLRDDD

Q6NRV8 E3 ubiquitin-protein ligase arkadia-B6.2e-0841.1Show/hide
Query:  SHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ
        S  K  +K++G EA    T       E C++CLS + EGE+ R  RLPC+H FH++C+ +W     K CPIC+
Subjt:  SHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ

Q90ZT7 E3 ubiquitin-protein ligase arkadia-A (Fragment)1.1e-0741.1Show/hide
Query:  SHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ
        S  K  +K++G EA    T       E C++CLS + EGE+ R  RLPC+H FH++C+ +W     K CPIC+
Subjt:  SHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A6.8e-1051.92Show/hide
Query:  CSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQFWLRDDD
        C VCLSK+ EGEE R  +L C H FHK C++ W H+   TCP+C+  L  DD
Subjt:  CSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQFWLRDDD

AT2G01150.1 RING-H2 finger protein 2B1.2e-0646.67Show/hide
Query:  CSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ
        C VCLSK+  GEE R  +L C H FHK C++ W       CP+C+
Subjt:  CSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ

AT3G51325.1 RING/U-box superfamily protein4.6e-1442.7Show/hide
Query:  ALAHPTLYDAVGR--EWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQK-TCPICQFWLRDDDGQTTEVLTEEMVIWFTSFH
        AL +P +    GR  E CSVCL + ME ++  +  LPC HEFH +C+  WF+  +K  CP+C+F        TT +LT+E+++WF+SFH
Subjt:  ALAHPTLYDAVGR--EWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQK-TCPICQFWLRDDDGQTTEVLTEEMVIWFTSFH

AT3G55530.1 RING/U-box superfamily protein4.9e-0847.37Show/hide
Query:  CSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQF-----WLRDDD
        CSVCL +V  GE  R   LPCLH+FH  CI  W  + Q TCP+C+F     W   D+
Subjt:  CSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQF-----WLRDDD

AT5G45290.1 RING/U-box superfamily protein4.2e-0742.22Show/hide
Query:  CSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ
        C +CL +  E +  R   LPC HEFHK C+ +W  E  + CP+C+
Subjt:  CSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTACAGGAAGATAATCTCCTCCTTTTATAACTTCGTTGTCCTCAAACTGTATCCAGGAATCAAGGATGAATCACATGTTAAGCAGAGGGCCAAGAAGGAAGGTTG
TGAAGCTCTGGCACATCCTACCTTGTATGATGCTGTGGGCAGGGAATGGTGTTCGGTGTGTTTGTCGAAAGTAATGGAGGGAGAGGAATCACGAGTTCTTCGTCTTCCTT
GCCTACATGAGTTTCATAAGATATGCATCAAGAGGTGGTTCCATGAATGCCAGAAAACCTGTCCAATCTGCCAGTTCTGGTTGAGAGATGATGATGGTCAAACAACAGAA
GTGCTTACCGAGGAGATGGTAATATGGTTCACTTCCTTTCATGTTGTTGGTTAC
mRNA sequenceShow/hide mRNA sequence
ATGGTGTACAGGAAGATAATCTCCTCCTTTTATAACTTCGTTGTCCTCAAACTGTATCCAGGAATCAAGGATGAATCACATGTTAAGCAGAGGGCCAAGAAGGAAGGTTG
TGAAGCTCTGGCACATCCTACCTTGTATGATGCTGTGGGCAGGGAATGGTGTTCGGTGTGTTTGTCGAAAGTAATGGAGGGAGAGGAATCACGAGTTCTTCGTCTTCCTT
GCCTACATGAGTTTCATAAGATATGCATCAAGAGGTGGTTCCATGAATGCCAGAAAACCTGTCCAATCTGCCAGTTCTGGTTGAGAGATGATGATGGTCAAACAACAGAA
GTGCTTACCGAGGAGATGGTAATATGGTTCACTTCCTTTCATGTTGTTGGTTAC
Protein sequenceShow/hide protein sequence
MVYRKIISSFYNFVVLKLYPGIKDESHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQFWLRDDDGQTTE
VLTEEMVIWFTSFHVVGY