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MS010649 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010649
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF295 domain-containing protein
Genome locationscaffold35:1185401..1185769
RNA-Seq ExpressionMS010649
SyntenyMS010649
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594746.1 putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]9.4e-3564.75Show/hide
Query:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA
        MDDSRV+WSDLPPE+ P     LETYID++        WRAS+PPFN +S LLPLDLPSP+F     TD LLIRR+IYRLSPLD   +S+SA+SSS   A
Subjt:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA

Query:  AEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV
        AEG WLAKVESTKLG MR+LHPLST Y  Y+N +F KEV
Subjt:  AEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV

XP_004134837.2 putative F-box protein At1g65770 [Cucumis sativus]7.7e-3762.59Show/hide
Query:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA
        M+DSRVRWSDLPPELWP     L+TYID++        WRAS+PPFNA+SPLLPLDLPSPVF   + TD  LIRRIIYRLSPLD H+T + A+SSSS ++
Subjt:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA

Query:  AEGS--------WLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV
        +  S        WLAKVESTKLGKMR+LHPLST YA  N+++  KEV
Subjt:  AEGS--------WLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV

XP_016899202.1 PREDICTED: putative F-box protein At1g65770 [Cucumis melo]1.8e-3866.9Show/hide
Query:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHET------SNSAAS
        M+DSRVRWSDLPPELWP     L+TYID++        WRAS+PPFNA+SPLLPLDLPSPVF   + TD  LIRRIIYRLSPLD H+T      S S++S
Subjt:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHET------SNSAAS

Query:  SSSGAAAEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV
        SSS  AAEG WLAKVESTKLGKMR+LHPLST YA  N+++F KEV
Subjt:  SSSGAAAEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV

XP_023518907.1 putative F-box protein At1g65770 isoform X1 [Cucurbita pepo subsp. pepo]7.2e-3564.75Show/hide
Query:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA
        MDDSRV+WSDLPPE+ P     LETYID++        WRAS+PPFN +S LLPLDLPSP+F     TD LLIRR+IYRLSPLD   +S+SA+SSS   A
Subjt:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA

Query:  AEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV
        AEG WLAKVESTKLG MR+LHPLST Y  Y+N +F KEV
Subjt:  AEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV

XP_038881861.1 putative F-box protein At1g65770 [Benincasa hispida]2.4e-3866Show/hide
Query:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHETSNSAASSSSGA-
        M+DSRVRWSDLPPELWP     L+T+IDI+        WRAS+PPFNAISPLLPLDLPSPVF   + TD  LIRRIIYRLSPL   +TS+SA+SSSS + 
Subjt:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHETSNSAASSSSGA-

Query:  ----------AAEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV
                  AAEG WLAKVESTKLGKMR+LHPLST YA YNN +F KEV
Subjt:  ----------AAEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV

TrEMBL top hitse value%identityAlignment
A0A0A0KJJ1 Uncharacterized protein3.7e-3762.59Show/hide
Query:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA
        M+DSRVRWSDLPPELWP     L+TYID++        WRAS+PPFNA+SPLLPLDLPSPVF   + TD  LIRRIIYRLSPLD H+T + A+SSSS ++
Subjt:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA

Query:  AEGS--------WLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV
        +  S        WLAKVESTKLGKMR+LHPLST YA  N+++  KEV
Subjt:  AEGS--------WLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV

A0A1S4DT77 putative F-box protein At1g657708.8e-3966.9Show/hide
Query:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHET------SNSAAS
        M+DSRVRWSDLPPELWP     L+TYID++        WRAS+PPFNA+SPLLPLDLPSPVF   + TD  LIRRIIYRLSPLD H+T      S S++S
Subjt:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHET------SNSAAS

Query:  SSSGAAAEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV
        SSS  AAEG WLAKVESTKLGKMR+LHPLST YA  N+++F KEV
Subjt:  SSSGAAAEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV

A0A5A7SHJ7 Putative F-box protein8.8e-3966.9Show/hide
Query:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHET------SNSAAS
        M+DSRVRWSDLPPELWP     L+TYID++        WRAS+PPFNA+SPLLPLDLPSPVF   + TD  LIRRIIYRLSPLD H+T      S S++S
Subjt:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVF---NDTDTLLIRRIIYRLSPLDRHET------SNSAAS

Query:  SSSGAAAEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV
        SSS  AAEG WLAKVESTKLGKMR+LHPLST YA  N+++F KEV
Subjt:  SSSGAAAEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV

A0A6J1EGF3 putative F-box protein At1g65770 isoform X11.3e-3464.03Show/hide
Query:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA
        MDDSRV+WSDLPPE+ P     LETYI+++        WRAS+PPFN +S LLPLDLPSP+F     TD LLIRR+IYRLSPLD   +S+SA+SSS   A
Subjt:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA

Query:  AEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV
        AEG WLAKVESTKLG MR+LHPLST Y  Y+N +F KEV
Subjt:  AEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV

A0A6J1KNW7 putative F-box protein At1g65770 isoform X14.5e-3564.75Show/hide
Query:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA
        MDDSRV+WSDLPPE+ P     LETYID++        WRAS+PPFN +S LLPLDLPSP+F     TD LLIRR+IYRLSPLD   +S+SA+SSS   A
Subjt:  MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSPVFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAA

Query:  AEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV
        AEG WLAKVESTKLG MR+LHPLST Y  Y+N +F KEV
Subjt:  AEGSWLAKVESTKLGKMRYLHPLSTCYA-YNNNMFWKEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGACAGCCGTGTACGGTGGTCCGATCTCCCTCCCGAGCTTTGGCCACTCGAAACCTACATCGACATAGTCTGGCGCGCTTCTATTCCTCCTTTCAACGCCATTTC
CCCTCTTTTACCTCTCGACCTCCCTTCTCCGGTCTTCAACGACACTGACACATTACTTATCCGACGGATAATCTATCGCCTCAGTCCTCTCGATCGCCATGAAACTTCAA
ACTCTGCTGCTTCTTCTTCTTCTGGCGCGGCGGCGGAGGGCAGCTGGTTGGCGAAGGTGGAGAGTACAAAGCTAGGTAAAATGCGTTATCTGCATCCACTTTCTACTTGC
TATGCATACAACAACAATATGTTTTGGAAAGAAGTG
mRNA sequenceShow/hide mRNA sequence
ATGGACGACAGCCGTGTACGGTGGTCCGATCTCCCTCCCGAGCTTTGGCCACTCGAAACCTACATCGACATAGTCTGGCGCGCTTCTATTCCTCCTTTCAACGCCATTTC
CCCTCTTTTACCTCTCGACCTCCCTTCTCCGGTCTTCAACGACACTGACACATTACTTATCCGACGGATAATCTATCGCCTCAGTCCTCTCGATCGCCATGAAACTTCAA
ACTCTGCTGCTTCTTCTTCTTCTGGCGCGGCGGCGGAGGGCAGCTGGTTGGCGAAGGTGGAGAGTACAAAGCTAGGTAAAATGCGTTATCTGCATCCACTTTCTACTTGC
TATGCATACAACAACAATATGTTTTGGAAAGAAGTG
Protein sequenceShow/hide protein sequence
MDDSRVRWSDLPPELWPLETYIDIVWRASIPPFNAISPLLPLDLPSPVFNDTDTLLIRRIIYRLSPLDRHETSNSAASSSSGAAAEGSWLAKVESTKLGKMRYLHPLSTC
YAYNNNMFWKEV