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MS010692 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010692
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerases IV and V subunit 4-like
Genome locationscaffold35:1435352..1436004
RNA-Seq ExpressionMS010692
SyntenyMS010692
Gene Ontology termsGO:0006352 - DNA-templated transcription, initiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030880 - RNA polymerase complex (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR005574 - RNA polymerase subunit RPB4/RPC9
IPR010997 - HRDC-like superfamily
IPR038324 - Rpb4/RPC9 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594716.1 DNA-directed RNA polymerases IV and V subunit 4, partial [Cucurbita argyrosperma subsp. sororia]6.1e-4689.72Show/hide
Query:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
        L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGL YAKRANHYVNTESVRPVLETLK++GV DSEICVIANVCPDT DEVF
Subjt:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF

Query:  ALLPSLK
        AL+PSLK
Subjt:  ALLPSLK
XP_022133315.1 DNA-directed RNA polymerases IV and V subunit 4-like [Momordica charantia]2.6e-4995.33Show/hide
Query:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
        L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
Subjt:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF

Query:  ALLPSLK
        ALLPSLK
Subjt:  ALLPSLK
XP_023003382.1 DNA-directed RNA polymerases IV and V subunit 4-like [Cucurbita maxima]1.6e-4690.65Show/hide
Query:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
        L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGL YAKRANHYVNTESVRPVLETLK++GV DSEICVIANVCPDTIDEVF
Subjt:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF

Query:  ALLPSLK
        AL+PSLK
Subjt:  ALLPSLK
XP_038881037.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida]2.7e-4689.72Show/hide
Query:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
        L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGL YAKRANHYVN+ESVRPVLETLK+HG+T+SEICVIANVCPDT DEVF
Subjt:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF

Query:  ALLPSLK
        ALLPSLK
Subjt:  ALLPSLK
XP_038881040.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Benincasa hispida]2.7e-4689.72Show/hide
Query:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
        L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGL YAKRANHYVN+ESVRPVLETLK+HG+T+SEICVIANVCPDT DEVF
Subjt:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF

Query:  ALLPSLK
        ALLPSLK
Subjt:  ALLPSLK
TrEMBL top hitse value%identityAlignment
A0A0A0KH45 RPOL4c domain-containing protein3.8e-4689.72Show/hide
Query:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
        L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMV LSADPTIKIPTSFDRGL YAKRANHYVN ESVRPVLETLK++GVTDSEICVIANVCPDT DEVF
Subjt:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF

Query:  ALLPSLK
        ALLPSLK
Subjt:  ALLPSLK
A0A1S3B2C2 DNA-directed RNA polymerases IV and V subunit 4 isoform X15.0e-4688.79Show/hide
Query:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
        L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMV LSADPTIKIPTSFDRGL YAKRANHYVN ESVRPVLETLK++G+TDSEICVIANVCPDT DEVF
Subjt:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF

Query:  ALLPSLK
        ALLPSLK
Subjt:  ALLPSLK
A0A1S3B2C7 DNA-directed RNA polymerases IV and V subunit 4 isoform X25.0e-4688.79Show/hide
Query:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
        L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMV LSADPTIKIPTSFDRGL YAKRANHYVN ESVRPVLETLK++G+TDSEICVIANVCPDT DEVF
Subjt:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF

Query:  ALLPSLK
        ALLPSLK
Subjt:  ALLPSLK
A0A6J1BUW9 DNA-directed RNA polymerases IV and V subunit 4-like1.3e-4995.33Show/hide
Query:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
        L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
Subjt:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF

Query:  ALLPSLK
        ALLPSLK
Subjt:  ALLPSLK
A0A6J1KMD1 DNA-directed RNA polymerases IV and V subunit 4-like7.7e-4790.65Show/hide
Query:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF
        L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGL YAKRANHYVNTESVRPVLETLK++GV DSEICVIANVCPDTIDEVF
Subjt:  LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVF

Query:  ALLPSLK
        AL+PSLK
Subjt:  ALLPSLK
SwissProt top hitse value%identityAlignment
O15514 DNA-directed RNA polymerase II subunit RPB46.0e-0430.43Show/hide
Query:  QCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
        + L++ E   LL+  + Q    SA+   ++   F + L Y  R + + N E++  V   L Q  +   E+  +AN+CP+T +E  AL+PSL+
Subjt:  QCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
O48890 DNA-directed RNA polymerase II subunit 44.7e-1740Show/hide
Query:  VKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
        +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ L Y KR + Y N ++VR V E L +H +T+ E+CV+ N+CP+T++E  A++PSLK
Subjt:  VKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
Q54S04 DNA-directed RNA polymerase II subunit rpb43.2e-0536.67Show/hide
Query:  SFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
        +F + L YA++ + Y N  S++ V   L +  + + EI  +AN+CP+  DE  +L+PSLK
Subjt:  SFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
Q6DBA5 DNA-directed RNA polymerases IV and V subunit 41.6e-2555Show/hide
Query:  ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
        +LP+N   +C+MDCEA Q+L GI+ Q+V LS DP+IKIP S+DR L Y +   HY N +SVR VLE LK +G++D E+CVIAN   +++DEV A +PSLK
Subjt:  ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
Q9D7M8 DNA-directed RNA polymerase II subunit RPB46.0e-0430.43Show/hide
Query:  QCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
        + L++ E   LL+  + Q    SA+   ++   F + L Y  R + + N E++  V   L Q  +   E+  +AN+CP+T +E  AL+PSL+
Subjt:  QCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
Arabidopsis top hitse value%identityAlignment
AT4G15950.1 RNA polymerase II, Rpb4, core protein1.1e-2655Show/hide
Query:  ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
        +LP+N   +C+MDCEA Q+L GI+ Q+V LS DP+IKIP S+DR L Y +   HY N +SVR VLE LK +G++D E+CVIAN   +++DEV A +PSLK
Subjt:  ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
AT5G09920.1 RNA polymerase II, Rpb4, core protein3.3e-1840Show/hide
Query:  VKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
        +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ L Y KR + Y N ++VR V E L +H +T+ E+CV+ N+CP+T++E  A++PSLK
Subjt:  VKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGCTTTAAATGGGCGTGCAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTCTATT
ATCAGCAGATCCAACAATAAAAATCCCTACGTCATTTGACAGGGGACTGCTGTATGCTAAAAGAGCCAATCATTATGTAAATACCGAGTCAGTTAGACCAGTTCTTGAAA
CCCTCAAGCAACATGGTGTAACGGACAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACCATTGATGAGGTTTTTGCTCTTCTTCCATCCTTGAAG
mRNA sequenceShow/hide mRNA sequence
TTGGCTTTAAATGGGCGTGCAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTCTATT
ATCAGCAGATCCAACAATAAAAATCCCTACGTCATTTGACAGGGGACTGCTGTATGCTAAAAGAGCCAATCATTATGTAAATACCGAGTCAGTTAGACCAGTTCTTGAAA
CCCTCAAGCAACATGGTGTAACGGACAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACCATTGATGAGGTTTTTGCTCTTCTTCCATCCTTGAAG
Protein sequenceShow/hide protein sequence
LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK