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MS010715 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010715
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTPD1 protein homolog 1-like
Genome locationscaffold35:1545337..1545651
RNA-Seq ExpressionMS010715
SyntenyMS010715
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
GO:0009408 - response to heat (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022133419.1 TPD1 protein homolog 1-like [Momordica charantia]3.2e-55100Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCSN
        ATCSN
Subjt:  ATCSN

XP_022949891.1 TPD1 protein homolog 1-like [Cucurbita moschata]9.5e-4477.14Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        +GSECS+ ++ VFQGQTAPLPDGIP++ V+ILN+C+SGCSISNIH+KCGWFSSARLVNPR+FRR++YDDCLINDG  L P QTLSFQYANTFPYPLS++S
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCSN
         TCS+
Subjt:  ATCSN

XP_022978329.1 TPD1 protein homolog 1-like [Cucurbita maxima]4.7e-4377.14Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        +GSECS+ D+ VFQGQTAPLPDGIP++ V+ILN+C+SGCSISNIH+KCGWFSSARLVNPR+FRR++YDDCLINDG  L P QTLSFQYANTF YPLS++S
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCSN
         TCS+
Subjt:  ATCSN

XP_023544807.1 TPD1 protein homolog 1-like [Cucurbita pepo subsp. pepo]7.3e-4477.14Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        +GSECS+ ++ VFQGQTAPLPDGIP++ V+ILN+C+SGCSISNIH+KCGWFSSARLVNPR+FRR++YDDCLINDG  L P QTLSFQYANTFPYPLS++S
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCSN
         TCS+
Subjt:  ATCSN

XP_038880861.1 TPD1 protein homolog 1-like isoform X2 [Benincasa hispida]3.1e-4275.24Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        IGSECS+ D+ +FQGQT PLPDGIP Y V+ILN+CAS CSISNIH+KCGWFSSARLVNPR+FRR+ YDDCL+++G  L P QTLSFQYANTFPYPLS++S
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCSN
         TCS+
Subjt:  ATCSN

TrEMBL top hitse value%identityAlignment
A0A1S3AZV4 TPD1 protein homolog 1-like isoform X18.1e-4175Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        IGSECS+ DI +FQG   PLP GIP Y V+ILN+CAS CSISNIH+KCGWFSSARLVNPR+F+R+ YDDCL+NDG  L P +TLSFQYANTFPYPLS++S
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCS
        ATCS
Subjt:  ATCS

A0A5D3CRM1 TPD1 protein-like protein 1-like isoform X28.1e-4175Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        IGSECS+ DI +FQG   PLP GIP Y V+ILN+CAS CSISNIH+KCGWFSSARLVNPR+F+R+ YDDCL+NDG  L P +TLSFQYANTFPYPLS++S
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCS
        ATCS
Subjt:  ATCS

A0A6J1BVX9 TPD1 protein homolog 1-like1.5e-55100Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCSN
        ATCSN
Subjt:  ATCSN

A0A6J1GDB1 TPD1 protein homolog 1-like4.6e-4477.14Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        +GSECS+ ++ VFQGQTAPLPDGIP++ V+ILN+C+SGCSISNIH+KCGWFSSARLVNPR+FRR++YDDCLINDG  L P QTLSFQYANTFPYPLS++S
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCSN
         TCS+
Subjt:  ATCSN

A0A6J1ITT0 TPD1 protein homolog 1-like2.3e-4377.14Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        +GSECS+ D+ VFQGQTAPLPDGIP++ V+ILN+C+SGCSISNIH+KCGWFSSARLVNPR+FRR++YDDCLINDG  L P QTLSFQYANTF YPLS++S
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCSN
         TCS+
Subjt:  ATCSN

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058352.3e-0844.44Show/hide
Query:  YTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYD--DCLINDGDPLPPAQTLSFQYANTFPYPL
        + VE++N C   C I N+ LKC  F  + LV+P   R L     +C++NDG PL P QTLSF Y+NT  + L
Subjt:  YTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYD--DCLINDGDPLPPAQTLSFQYANTFPYPL

Q1G3T1 TPD1 protein homolog 12.3e-4068.93Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        IG +CS+ DI +FQG T PLP G+P+YTVEI N+C S C+I+ IH+ CGWFSS RLVNPRVFRRL YDDCL+NDG PL P Q+LSFQYAN+F YPLS+AS
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATC
         +C
Subjt:  ATC

Q2QR54 TPD1 protein homolog 1A1.5e-3157.43Show/hide
Query:  DIEVFQGQTAPLPDGIPAYTVEILNACASG------CSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLASAT
        DI ++QG+  PLP G+PAYTV+++N CA G      C+I+ IH++CGWFSS  LV+PRVFRRL +DDCL+NDG PL   +T+SF+Y N+FPY LS++ AT
Subjt:  DIEVFQGQTAPLPDGIPAYTVEILNACASG------CSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLASAT

Query:  C
        C
Subjt:  C

Q6TLJ2 Protein TAPETUM DETERMINANT 19.9e-3663.46Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        IG +C   DI V Q  T P+P+GIP Y VEI N C SGC IS IH+ CGWFSSA+L+NPRVF+R+ YDDCL+N+G PLP   TLSF YANTFPY LS+A 
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCS
         TC+
Subjt:  ATCS

Q8S6P9 TPD1 protein homolog 1B1.5e-2345.45Show/hide
Query:  CSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLASATC
        CSE ++ V+Q     LP GIP Y+VEI+N C + C++ ++H+ CG F+SA LV+P  F+R+ ++DCL+  G  L P++ +SFQY+N+F YPL++A+  C
Subjt:  CSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLASATC

Arabidopsis top hitse value%identityAlignment
AT1G05835.1 PHD finger protein1.6e-0944.44Show/hide
Query:  YTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYD--DCLINDGDPLPPAQTLSFQYANTFPYPL
        + VE++N C   C I N+ LKC  F  + LV+P   R L     +C++NDG PL P QTLSF Y+NT  + L
Subjt:  YTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYD--DCLINDGDPLPPAQTLSFQYANTFPYPL

AT1G32583.1 FUNCTIONS IN: molecular_function unknown1.6e-4168.93Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        IG +CS+ DI +FQG T PLP G+P+YTVEI N+C S C+I+ IH+ CGWFSS RLVNPRVFRRL YDDCL+NDG PL P Q+LSFQYAN+F YPLS+AS
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATC
         +C
Subjt:  ATC

AT4G24972.1 tapetum determinant 17.0e-3763.46Show/hide
Query:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS
        IG +C   DI V Q  T P+P+GIP Y VEI N C SGC IS IH+ CGWFSSA+L+NPRVF+R+ YDDCL+N+G PLP   TLSF YANTFPY LS+A 
Subjt:  IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLAS

Query:  ATCS
         TC+
Subjt:  ATCS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGGATCAGAATGTTCCGAGGGCGACATCGAGGTGTTTCAAGGCCAAACAGCTCCTCTTCCGGATGGGATTCCGGCGTACACAGTTGAGATATTAAACGCCTGTGCTTC
AGGCTGCAGCATCTCCAACATTCACCTCAAATGTGGGTGGTTCAGCTCCGCCCGATTGGTCAATCCCAGAGTTTTCCGGCGACTGCAGTACGACGACTGCCTTATCAACG
ACGGCGACCCTCTGCCTCCTGCTCAAACTCTGTCTTTCCAATATGCCAACACTTTCCCTTACCCTCTCTCTCTCGCTTCTGCAACTTGTTCTAAT
mRNA sequenceShow/hide mRNA sequence
ATTGGATCAGAATGTTCCGAGGGCGACATCGAGGTGTTTCAAGGCCAAACAGCTCCTCTTCCGGATGGGATTCCGGCGTACACAGTTGAGATATTAAACGCCTGTGCTTC
AGGCTGCAGCATCTCCAACATTCACCTCAAATGTGGGTGGTTCAGCTCCGCCCGATTGGTCAATCCCAGAGTTTTCCGGCGACTGCAGTACGACGACTGCCTTATCAACG
ACGGCGACCCTCTGCCTCCTGCTCAAACTCTGTCTTTCCAATATGCCAACACTTTCCCTTACCCTCTCTCTCTCGCTTCTGCAACTTGTTCTAAT
Protein sequenceShow/hide protein sequence
IGSECSEGDIEVFQGQTAPLPDGIPAYTVEILNACASGCSISNIHLKCGWFSSARLVNPRVFRRLQYDDCLINDGDPLPPAQTLSFQYANTFPYPLSLASATCSN