CuGenDBv2

Gene ID	MS010749
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	scaffold35:1746683..1747763
RNA-Seq Expression	MS010749
Synteny	MS010749
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0009409 - response to cold (biological process) GO:0009414 - response to water deprivation (biological process) GO:0009651 - response to salt stress (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0033314 - mitotic DNA replication checkpoint (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0044183 - protein folding chaperone (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003688 - DNA replication origin binding (molecular function)
InterPro domains	IPR038052 - Chaperonin-like RbcX superfamily IPR003435 - Chaperonin-like RbcX

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008440039.1 PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo]

2.4e-71

79.78

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESSAR+LSPTQFPS+F LPNLNR  VFP+ P KP+ASK   ++L C KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIV AQLESYNPEA++ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHKSL    +    VRSAYCKNDFEWDNLKRLA KM  ESNTR+MREY+TETSPS+TEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

XP_022132911.1 chaperonin-like RBCX protein 1, chloroplastic [Momordica charantia]

2.4e-87

94.94

Show/hide

Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHKSL    +    VRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

XP_023003335.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]

9.7e-73

83.24

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MES AR+LSPT FPSLFPLPNLNRS   P+WP KP+ASK   L+L CHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLESYNPEAH ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP
        RHSLNDGDKFL++LMRESSRHKSL    +    VRSAYCKNDFEWDNLKRLASKM  ESNTRLMREYVTETSP
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP

XP_023518339.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo]

8.2e-72

82.08

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MES AR+LSPT FPS+FPLPNLNR    P+WP KP+ASK   L+L CHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLESYNPEAH ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP
        RHSLNDGDKFL++LMRESSRHKSL    +    VRSAYCKNDFEWDNLKRLASKM  ESNTRLMREYVTETSP
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP

XP_038881664.1 chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]

8.8e-74

82.58

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        ME SAR+LS TQFPSLFPLPNLNRS VFP+WP KPKA+K   ++L C KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIV AQLESYNPEA+ ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHKSL    +    VRSAYCKNDFEWDNLKRLA KM SESNTRLMREYVTETSPS+TEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMZ4 Uncharacterized protein

2.0e-71

79.78

Show/hide

Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESSAR+LSPTQFPSLF LPNLNR  VFP+ P KP+A  F  ++L C KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIV AQLESYNPEA++ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHK+L    +    VRSAYCKNDFEWDNLKRLA KM SESNTR+MREY+TETSPS+TEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

A0A1S3B054 uncharacterized protein LOC103484635

1.2e-71

79.78

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESSAR+LSPTQFPS+F LPNLNR  VFP+ P KP+ASK   ++L C KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIV AQLESYNPEA++ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHKSL    +    VRSAYCKNDFEWDNLKRLA KM  ESNTR+MREY+TETSPS+TEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

A0A5D3CNU4 Chaperonin-like RBCX protein 1

1.2e-71

79.78

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESSAR+LSPTQFPS+F LPNLNR  VFP+ P KP+ASK   ++L C KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIV AQLESYNPEA++ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHKSL    +    VRSAYCKNDFEWDNLKRLA KM  ESNTR+MREY+TETSPS+TEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

A0A6J1BTL5 chaperonin-like RBCX protein 1, chloroplastic

1.2e-87

94.94

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHKSL    +    VRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

4.7e-73

83.24

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MES AR+LSPT FPSLFPLPNLNRS   P+WP KP+ASK   L+L CHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLESYNPEAH ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP
        RHSLNDGDKFL++LMRESSRHKSL    +    VRSAYCKNDFEWDNLKRLASKM  ESNTRLMREYVTETSP
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP

SwissProt top hits

e value

%identity

Alignment

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

5.6e-47

59.32

Show/hide

Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESS+ +L  +    L P       R    +P    + K  + ++  +KMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV AQLESYNPEA++EL EFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETE
         +S++DGDKF A+LMR SSRH +L    +    VRSAYCKNDFEWDN+KRLA K   +SNTRLMREYV ETS  ET+
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETE

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

4.0e-48

59.32

Show/hide

Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESS+ +L  +    L P       R    +P    + K  + ++  +KMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV AQLESYNPEA++EL EFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETE
         +S++DGDKF A+LMR SSRH +L    +    VRSAYCKNDFEWDN+KRLA K   +SNTRLMREYV ETS  ET+
Subjt:  RHSLNDGDKFLASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETE

Sequences

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CDS sequence

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ATGGAATCGTCTGCAAGGGTTCTCTCCCCGACTCAATTTCCTTCTCTTTTTCCATTACCCAATTTAAATAGAAGCAGAGTTTTCCCACTCTGGCCAACGAAGCCGAAAGC
CTCTAAGTTTACTCGCTTACAGTTACAATGCCATAAGATGTATGTTCCCGGGTTTGGAGAAGCGTCACCAGAAGCGAAGGCAGCCAAAAATCTGCACAATTTCTTCACGT
ATGTTGCTGTTAGGATCGTAATTGCGCAGCTTGAGAGCTATAATCCAGAGGCACACGTGGAGTTAATGGAGTTTCTTGATAGACATTCACTGAATGATGGGGACAAGTTC
CTGGCCAGTTTGATGCGCGAATCGTCTAGGCATAAGAGTCTTGGTAAAGCCCAAATCACCTCTTTTTCTGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAA
CCTCAAGCGATTGGCATCCAAAATGGCGAGTGAATCCAACACGAGATTGATGAGGGAATATGTGACGGAGACGAGTCCATCGGAAACTGAGAAG

mRNA sequence

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Protein sequence

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MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKF
LASLMRESSRHKSLGKAQITSFSVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

MS010749 (gene) of Bitter gourd (TR) v1 genome