; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010759 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010759
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionmalignant T-cell-amplified sequence 1 homolog
Genome locationscaffold35:1826510..1826964
RNA-Seq ExpressionMS010759
SyntenyMS010759
Gene Ontology termsGO:0001731 - formation of translation preinitiation complex (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR016437 - MCT-1/Tma20
IPR041366 - Pre-PUA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACA24498.1 pseudouridine synthase and archaeosine transglycosylase-like protein [Cucumis sativus]5.0e-3898.8Show/hide
Query:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

XP_008450609.1 PREDICTED: malignant T-cell-amplified sequence 1 homolog [Cucumis melo]5.0e-3898.8Show/hide
Query:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

XP_011659846.1 malignant T-cell-amplified sequence 1 homolog [Cucumis sativus]5.0e-3898.8Show/hide
Query:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

XP_022135845.1 malignant T-cell-amplified sequence 1 homolog [Momordica charantia]5.0e-3898.8Show/hide
Query:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

XP_038887727.1 malignant T-cell-amplified sequence 1 homolog [Benincasa hispida]5.0e-3898.8Show/hide
Query:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

TrEMBL top hitse value%identityAlignment
A0A0A0LYF6 PUA domain-containing protein2.4e-3898.8Show/hide
Query:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

A0A1S3BPJ3 malignant T-cell-amplified sequence 1 homolog2.4e-3898.8Show/hide
Query:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

A0A6J1C273 malignant T-cell-amplified sequence 1 homolog2.4e-3898.8Show/hide
Query:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

A0A6J1HVW2 malignant T-cell-amplified sequence 1 homolog5.4e-3897.59Show/hide
Query:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +FSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

B3TLK5 Pseudouridine synthase and archaeosine transglycosylase-like protein2.4e-3898.8Show/hide
Query:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

SwissProt top hitse value%identityAlignment
Q2KIE4 Malignant T-cell-amplified sequence 11.1e-1444.3Show/hide
Query:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        E+VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+ + +C  H+ ++ VN   LFF  R+GP+ PTLRLLH+
Subjt:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

Q4G009 Malignant T-cell-amplified sequence 11.1e-1444.3Show/hide
Query:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        E+VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+ + +C  H+ ++ VN   LFF  R+GP+ PTLRLLH+
Subjt:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

Q86KL4 Malignant T-cell-amplified sequence 1 homolog6.4e-2053.95Show/hide
Query:  SAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +  NQ+K+S+QR I+ SI  +YP L+ + +D+ PKK P++  KCQNH+NLV++NN  LFFN R+GPY PTLR LH+
Subjt:  SAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

Q9DB27 Malignant T-cell-amplified sequence 11.1e-1444.3Show/hide
Query:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        E+VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+ + +C  H+ ++ VN   LFF  R+GP+ PTLRLLH+
Subjt:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

Q9ULC4 Malignant T-cell-amplified sequence 11.1e-1444.3Show/hide
Query:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        E+VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+ + +C  H+ ++ VN   LFF  R+GP+ PTLRLLH+
Subjt:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

Arabidopsis top hitse value%identityAlignment
AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein2.3e-3379.52Show/hide
Query:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +F  E++S+QNQVKASVQR+IRQSI +EYPGLE V++DLLPKK PLIV KC NHL LVVVNNVPLFF IRDGPYMPTLRLLHQ
Subjt:  RFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTCATTTTAGGTTTTCTACTGAAGACGTGTCTGCTCAGAACCAAGTCAAGGCATCAGTGCAACGGAAAATTCGGCAAAGTATAGCTGAAGAATATCCTGGGCTAGAGCC
AGTCTTGGATGATTTGCTTCCTAAAAAAGCCCCTCTGATTGTAACTAAGTGTCAAAACCATCTCAATCTGGTTGTTGTGAATAATGTGCCACTCTTTTTCAACATCCGTG
ATGGACCATACATGCCTACCCTAAGGTTGCTTCACCAATGTAAT
mRNA sequenceShow/hide mRNA sequence
TTTCATTTTAGGTTTTCTACTGAAGACGTGTCTGCTCAGAACCAAGTCAAGGCATCAGTGCAACGGAAAATTCGGCAAAGTATAGCTGAAGAATATCCTGGGCTAGAGCC
AGTCTTGGATGATTTGCTTCCTAAAAAAGCCCCTCTGATTGTAACTAAGTGTCAAAACCATCTCAATCTGGTTGTTGTGAATAATGTGCCACTCTTTTTCAACATCCGTG
ATGGACCATACATGCCTACCCTAAGGTTGCTTCACCAATGTAAT
Protein sequenceShow/hide protein sequence
FHFRFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQCN