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MS010818 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010818
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLysM domain-containing protein
Genome locationscaffold35:2200649..2201051
RNA-Seq ExpressionMS010818
SyntenyMS010818
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]4.0e-2060.82Show/hide
Query:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYI-TGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFL
        MAKA  SIA+   FL A SLLI +ISV+ R+LF  + +    L LQCN  YGV++GDTCFAI Q FKL+T  F+FINPN+NCS LFV QW+CVN FL
Subjt:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYI-TGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFL

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]6.8e-2055.67Show/hide
Query:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFLV
        MAKA+ S +  + FL A SLLI SISV++RS      +  GL LQCN VYGV+NGDTCF + Q FK++T  F+FINPN+NC+DLF+GQW+C++  L+
Subjt:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFLV

KZN07240.1 hypothetical protein DCAR_008077 [Daucus carota subsp. sativus]9.5e-1451.25Show/hide
Query:  LFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNG
        +  LSL ++    +SR++F  + +       C+TV+GV+ GDTCF I Q FKLSTA F+ INPNINC+ +FVGQWVCV+G
Subjt:  LFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNG

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]7.5e-1959.38Show/hide
Query:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFL
        MAKA   IA+   FL A  LLI SISV+      ++     L LQCN  YGV++GDTCFA+  TFKLST  FNFINPN+NCS LFVGQW+CVN FL
Subjt:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFL

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]2.8e-1858.33Show/hide
Query:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFL
        MAKA  SIA+   FL A SLLI +ISV+      ++     L LQCN  YGV++GDTCFAI Q FKL+T  F+FINPN+NCS LFV QW+CVN FL
Subjt:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFL

TrEMBL top hitse value%identityAlignment
A0A067K3Z8 LysM domain-containing protein1.0e-1345.92Show/hide
Query:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNL----QCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNG
        MAK+ T  A+   F   LS L+++   + RSLF       G+ +    +C++VYGV +GDTCFA+ Q F L+T  F+ INPN+NC+ LFVGQW+CV+G
Subjt:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNL----QCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNG

A0A0A0KHZ8 LysM domain-containing protein3.3e-2055.67Show/hide
Query:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFLV
        MAKA+ S +  + FL A SLLI SISV++RS      +  GL LQCN VYGV+NGDTCF + Q FK++T  F+FINPN+NC+DLF+GQW+C++  L+
Subjt:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFLV

A0A0A0KLD2 LysM domain-containing protein1.9e-2060.82Show/hide
Query:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYI-TGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFL
        MAKA  SIA+   FL A SLLI +ISV+ R+LF  + +    L LQCN  YGV++GDTCFAI Q FKL+T  F+FINPN+NCS LFV QW+CVN FL
Subjt:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYI-TGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFL

A0A166F1W1 LysM domain-containing protein4.6e-1451.25Show/hide
Query:  LFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNG
        +  LSL ++    +SR++F  + +       C+TV+GV+ GDTCF I Q FKLSTA F+ INPNINC+ +FVGQWVCV+G
Subjt:  LFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNG

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like3.6e-1959.38Show/hide
Query:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFL
        MAKA   IA+   FL A  LLI SISV+      ++     L LQCN  YGV++GDTCFA+  TFKLST  FNFINPN+NCS LFVGQW+CVN FL
Subjt:  MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGGCTGTGACCTCAATTGCCATGAATCTTACCTTCCTGTTCGCCCTCTCTCTTCTCATCCTCTCAATTTCTGTCCAAAGTCGATCTCTCTTCCTTTTATTATA
CATCACAGGTGGATTGAATTTGCAATGCAACACAGTTTATGGAGTACAGAATGGAGACACATGCTTCGCTATTGTCCAGACATTTAAATTGAGCACTGCACGATTCAATT
TTATTAATCCAAATATCAATTGCTCTGATCTCTTCGTTGGTCAGTGGGTTTGCGTGAATGGCTTTCTCGTC
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGGCTGTGACCTCAATTGCCATGAATCTTACCTTCCTGTTCGCCCTCTCTCTTCTCATCCTCTCAATTTCTGTCCAAAGTCGATCTCTCTTCCTTTTATTATA
CATCACAGGTGGATTGAATTTGCAATGCAACACAGTTTATGGAGTACAGAATGGAGACACATGCTTCGCTATTGTCCAGACATTTAAATTGAGCACTGCACGATTCAATT
TTATTAATCCAAATATCAATTGCTCTGATCTCTTCGTTGGTCAGTGGGTTTGCGTGAATGGCTTTCTCGTC
Protein sequenceShow/hide protein sequence
MAKAVTSIAMNLTFLFALSLLILSISVQSRSLFLLLYITGGLNLQCNTVYGVQNGDTCFAIVQTFKLSTARFNFINPNINCSDLFVGQWVCVNGFLV