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MS010819 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010819
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLysM domain-containing protein
Genome locationscaffold35:2203841..2204008
RNA-Seq ExpressionMS010819
SyntenyMS010819
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]6.5e-1565.45Show/hide
Query:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI
        L LQCNK +GV+SGDTCFA+++ FKL+T  F+FINPN+NCS LF+ QW+CVN F+
Subjt:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]3.5e-1360Show/hide
Query:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI
        L LQCNKV+GV++GDTCF L + FK++T  F+FINPN+NC++LFIGQW+C++  +
Subjt:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI

KVH96602.1 Peptidoglycan-binding lysin domain-containing protein [Cynara cardunculus var. scolymus]1.8e-1254.72Show/hide
Query:  ILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGF
        +L CNK++G ++GDTCF++ + F L+TT F+ INPN+NC  +F+G+W+CVNGF
Subjt:  ILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGF

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]3.1e-1774.55Show/hide
Query:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI
        L LQCNK +GV+SGDTCFAL+ TFKLST  FNFINPN+NCS LF+GQW+CVN F+
Subjt:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]6.5e-1565.45Show/hide
Query:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI
        L LQCNK +GV+SGDTCFA+++ FKL+T  F+FINPN+NCS LF+ QW+CVN F+
Subjt:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein1.7e-1360Show/hide
Query:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI
        L LQCNKV+GV++GDTCF L + FK++T  F+FINPN+NC++LFIGQW+C++  +
Subjt:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI

A0A0A0KLD2 LysM domain-containing protein3.1e-1565.45Show/hide
Query:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI
        L LQCNK +GV+SGDTCFA+++ FKL+T  F+FINPN+NCS LF+ QW+CVN F+
Subjt:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI

A0A103XTI0 Peptidoglycan-binding lysin domain-containing protein8.5e-1354.72Show/hide
Query:  ILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGF
        +L CNK++G ++GDTCF++ + F L+TT F+ INPN+NC  +F+G+W+CVNGF
Subjt:  ILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGF

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like1.5e-1774.55Show/hide
Query:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI
        L LQCNK +GV+SGDTCFAL+ TFKLST  FNFINPN+NCS LF+GQW+CVN F+
Subjt:  LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFI

A0A498IRU4 LysM domain-containing protein1.5e-1262.75Show/hide
Query:  LQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNG
        L+C+K +GV+SGDTCF + +TF LST  F  INPN+NC+ LFIGQW+C+NG
Subjt:  LQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGATTTTGCAATGCAACAAAGTTCATGGAGTAGAAAGTGGAGACACCTGCTTTGCTCTTTCCCGAACATTTAAATTGAGTACTACACAATTTAATTTTATTAATCCAAA
TATCAATTGCTCCAATCTCTTTATTGGTCAGTGGGTTTGCGTCAATGGGTTCATCGGC
mRNA sequenceShow/hide mRNA sequence
TTGATTTTGCAATGCAACAAAGTTCATGGAGTAGAAAGTGGAGACACCTGCTTTGCTCTTTCCCGAACATTTAAATTGAGTACTACACAATTTAATTTTATTAATCCAAA
TATCAATTGCTCCAATCTCTTTATTGGTCAGTGGGTTTGCGTCAATGGGTTCATCGGC
Protein sequenceShow/hide protein sequence
LILQCNKVHGVESGDTCFALSRTFKLSTTQFNFINPNINCSNLFIGQWVCVNGFIG