CuGenDBv2

Gene ID	MS010824
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ribosomal RNA-processing protein 17-like
Genome location	scaffold35:2263998..2265924
RNA-Seq Expression	MS010824
Synteny	MS010824
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7026594.1 hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-71

81.31

Show/hide

Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKN+ +EGG L QP  RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EKELVL+GG+LPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D     E+EEE+P APISETTTYDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LP+TKKKPFKKVA++KSR K RSK DKKKGRKKK
Subjt:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

XP_008455785.1 PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]

3.6e-73

82.99

Show/hide

Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKNDG+EGGELAQP  RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVLYGG+LPADR VD+QND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D E+EEE+P AP SE  TYD+GN+KVTV TSEVSR+GEI PIDK QTA  QL+ KDKKHNLPITKKK FKKVAKQ+SRPK RSKRDKKKGRKKK
Subjt:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

9.2e-93

100

Show/hide

Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
Subjt:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

6.8e-72

81.82

Show/hide

Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKN+ +EGG L QP  RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EKELVL+GG+LPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D     E+EEEKP APISETTTYDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LP+TKKKPFKKVA++KSR K RSK DKKKGRKKK
Subjt:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

7.8e-76

83.84

Show/hide

Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MV+NDG+EG ELAQP  RHIKKRAL+NKAL+VSFNEKDLRD+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RKKR+ EK+LVLYGG+LPADRPVDE+ND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEE----EEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        DHEE    EEEKP AP SETTTYDSGNIKVTVITSEVSR+ EI PIDK QTATTQL AKDKKHNLP+TKKKPFKKVAKQ+SRPK RSKRDK+KG+KKK
Subjt:  DHEE----EEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

2.4e-70

80.61

Show/hide

Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVL+GG+LPADR VD+QND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTA--TTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D   EEE+P AP+SE TTYD+GN+KVTV TSEVSR+ EI PIDK QTA  T QL+ KDKKHNLPITKKK FKKVAKQ+ RPK RSKRDKKKGRKKK
Subjt:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTA--TTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

1.8e-73

82.99

Show/hide

Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKNDG+EGGELAQP  RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVLYGG+LPADR VD+QND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D E+EEE+P AP SE  TYD+GN+KVTV TSEVSR+GEI PIDK QTA  QL+ KDKKHNLPITKKK FKKVAKQ+SRPK RSKRDKKKGRKKK
Subjt:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

4.4e-93

100

Show/hide

Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
Subjt:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

2.8e-71

81.31

Show/hide

Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKN+ +EGG L QP  RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EK+LVL+GG+LPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D     E+EEEKP APISETT YDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LPITKKKPFKKVA++KSR K RSK DKKKGRKKK
Subjt:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

1.1e-70

80.81

Show/hide

Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKN+  EGG L QP  RH+KK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EK+LVL+GG+LPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D     E+EEEKP APISETTTYDSGNIKVTV TSEV R+ EI PIDK Q +T+QL+AKDKKH+LPITKKKPFKKVA++KSR K RSK DKKKGRKKK
Subjt:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

2.1e-31

53.48

Show/hide

Query:  DEGGELAQP-RGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEE
        +E G LA P   RHI KRA KNK+L VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RK RK E+ +V   G    D   +++  D E+E
Subjt:  DEGGELAQP-RGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEE

Query:  EEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDK---KHNLPITKKKPFKKVAKQKSRPKPRSKRDKKK
        E +P A  S TT YD+G +KVTV TSE+SR+ E  PI K +T +T+  +  K   K  +P+ K KP K+ ++++S  K   KRDKKK
Subjt:  EEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDK---KHNLPITKKKPFKKVAKQKSRPKPRSKRDKKK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGAAGAACGACGGGGACGAAGGAGGTGAGCTCGCACAACCTCGTGGTCGCCACATAAAGAAGAGAGCTCTCAAGAACAAAGCTCTTGCAGTTTCTTTCAATGAGAA
AGACTTGAGGGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCGGAGAAACAGCAAGAGGAAGCGAAGCGGCGGAAGCGCATCGAATTGCGCA
AAAAGAGAAAAGAAGAAAAAGAGCTGGTGCTATATGGTGGTATTCTACCAGCTGATCGGCCGGTTGATGAGCAGAATGATGATCACGAGGAAGAGGAAGAGAAGCCATTT
GCCCCAATTTCTGAGACGACGACGTACGACAGTGGTAACATCAAAGTCACAGTGATAACAAGTGAGGTATCTCGTGACGGAGAAATCTGTCCCATCGACAAGTCACAGAC
AGCAACAACCCAATTGGTTGCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTCAAGAAAGTTGCAAAACAGAAGTCGAGGCCAAAGCCCCGAAGTA
AACGAGACAAAAAGAAAGGAAGAAAAAAGAAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPF
APISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

MS010824 (gene) of Bitter gourd (TR) v1 genome