; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010845 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010845
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear-pore anchor isoform X2
Genome locationscaffold35:2404175..2404966
RNA-Seq ExpressionMS010845
SyntenyMS010845
Gene Ontology termsGO:0006606 - protein import into nucleus (biological process)
GO:0005635 - nuclear envelope (cellular component)
GO:0031981 - nuclear lumen (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142170.1 nuclear-pore anchor isoform X1 [Momordica charantia]3.9e-88100Show/hide
Query:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
        MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
Subjt:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN

Query:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
Subjt:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

XP_022142171.1 nuclear-pore anchor isoform X2 [Momordica charantia]3.9e-88100Show/hide
Query:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
        MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
Subjt:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN

Query:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
Subjt:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

XP_022142172.1 nuclear-pore anchor isoform X3 [Momordica charantia]3.9e-88100Show/hide
Query:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
        MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
Subjt:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN

Query:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
Subjt:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

XP_022952920.1 nuclear-pore anchor isoform X4 [Cucurbita moschata]1.2e-8495.68Show/hide
Query:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
        MAHLFISDEEFSRHSNDAAF+AEKADAFI+GLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQ HQLN
Subjt:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN

Query:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        LLSIGKDGEIERLNTELSELHKSKRQLMELIE KDLEIGEKD+TIKSYLDKIVNLSETAAQREAR+SE+DMELVRSRAEFA LSQ
Subjt:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

XP_023511434.1 nuclear-pore anchor isoform X2 [Cucurbita pepo subsp. pepo]1.2e-8495.68Show/hide
Query:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
        MAHLFISDEEFSRHSNDAAF+AEKADAFI+GLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQ HQLN
Subjt:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN

Query:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        LLSIGKDGEIERLNTELSELHKSKRQLMELIE KDLEIGEKD+TIKSYLDKIVNLSETAAQREAR+SE+DMELVRSRAEFA LSQ
Subjt:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

TrEMBL top hitse value%identityAlignment
A0A6J1CK56 nuclear-pore anchor isoform X11.9e-88100Show/hide
Query:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
        MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
Subjt:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN

Query:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
Subjt:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

A0A6J1CLF4 nuclear-pore anchor isoform X21.9e-88100Show/hide
Query:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
        MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
Subjt:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN

Query:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
Subjt:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

A0A6J1CLZ5 nuclear-pore anchor isoform X31.9e-88100Show/hide
Query:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
        MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
Subjt:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN

Query:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
Subjt:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

A0A6J1GLK1 nuclear-pore anchor isoform X15.6e-8595.68Show/hide
Query:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
        MAHLFISDEEFSRHSNDAAF+AEKADAFI+GLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQ HQLN
Subjt:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN

Query:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        LLSIGKDGEIERLNTELSELHKSKRQLMELIE KDLEIGEKD+TIKSYLDKIVNLSETAAQREAR+SE+DMELVRSRAEFA LSQ
Subjt:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

A0A6J1GLY3 nuclear-pore anchor isoform X35.6e-8595.68Show/hide
Query:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN
        MAHLFISDEEFSRHSNDAAF+AEKADAFI+GLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQ HQLN
Subjt:  MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLN

Query:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        LLSIGKDGEIERLNTELSELHKSKRQLMELIE KDLEIGEKD+TIKSYLDKIVNLSETAAQREAR+SE+DMELVRSRAEFA LSQ
Subjt:  LLSIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

SwissProt top hitse value%identityAlignment
A4GSN8 Nuclear-pore anchor5.3e-5665.03Show/hide
Query:  LFISDEEFSRHSNDAA-FMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLL
        LF+ DEE +R S+DAA  +AE+AD +I+ +Y+EL++VRA+ADAASITAEQTCSLL+QK+LSLS +FS L+SQNA+LQ+  + RL+ELA+ ++QKHQL+L 
Subjt:  LFISDEEFSRHSNDAA-FMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLL

Query:  SIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        SI KDGE+ER++TE+SELHKSKRQLMEL+EQKD EI EK++TIKSYLDKIV L++T++++EARL+E   EL RS+A  +RLSQ
Subjt:  SIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

Arabidopsis top hitse value%identityAlignment
AT1G79280.1 nuclear pore anchor3.7e-5765.03Show/hide
Query:  LFISDEEFSRHSNDAA-FMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLL
        LF+ DEE +R S+DAA  +AE+AD +I+ +Y+EL++VRA+ADAASITAEQTCSLL+QK+LSLS +FS L+SQNA+LQ+  + RL+ELA+ ++QKHQL+L 
Subjt:  LFISDEEFSRHSNDAA-FMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLL

Query:  SIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        SI KDGE+ER++TE+SELHKSKRQLMEL+EQKD EI EK++TIKSYLDKIV L++T++++EARL+E   EL RS+A  +RLSQ
Subjt:  SIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

AT1G79280.2 nuclear pore anchor3.7e-5765.03Show/hide
Query:  LFISDEEFSRHSNDAA-FMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLL
        LF+ DEE +R S+DAA  +AE+AD +I+ +Y+EL++VRA+ADAASITAEQTCSLL+QK+LSLS +FS L+SQNA+LQ+  + RL+ELA+ ++QKHQL+L 
Subjt:  LFISDEEFSRHSNDAA-FMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLL

Query:  SIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        SI KDGE+ER++TE+SELHKSKRQLMEL+EQKD EI EK++TIKSYLDKIV L++T++++EARL+E   EL RS+A  +RLSQ
Subjt:  SIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ

AT1G79280.3 nuclear pore anchor3.7e-5765.03Show/hide
Query:  LFISDEEFSRHSNDAA-FMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLL
        LF+ DEE +R S+DAA  +AE+AD +I+ +Y+EL++VRA+ADAASITAEQTCSLL+QK+LSLS +FS L+SQNA+LQ+  + RL+ELA+ ++QKHQL+L 
Subjt:  LFISDEEFSRHSNDAA-FMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLL

Query:  SIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ
        SI KDGE+ER++TE+SELHKSKRQLMEL+EQKD EI EK++TIKSYLDKIV L++T++++EARL+E   EL RS+A  +RLSQ
Subjt:  SIGKDGEIERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCACCTATTCATCTCCGACGAGGAGTTCTCTCGGCACTCCAACGACGCCGCTTTCATGGCGGAGAAGGCCGATGCCTTCATCAAAGGCCTCTACAGCGAGCTCGA
GACCGTCAGAGCCCAAGCCGATGCTGCTTCAATTACTGCGGAGCAGACTTGTTCCCTTCTCGACCAGAAGTTTCTTTCTCTTTCCGCCGAGTTCTCTGACCTCCAGTCTC
AGAATGCACAGCTTCAAACCACCCTTGAGCTCAGACTCTCCGAGCTCGCCGAAGTCAAATCCCAAAAACACCAACTCAATTTACTTTCGATTGGGAAGGATGGGGAGATA
GAGAGGCTAAATACAGAGTTATCCGAACTGCATAAATCAAAAAGGCAGTTGATGGAGCTCATTGAGCAGAAGGATTTAGAAATTGGTGAAAAAGATGCCACTATAAAGTC
TTATCTTGATAAGATTGTAAATTTATCTGAAACGGCTGCTCAAAGAGAAGCCCGTTTAAGTGAGGTCGACATGGAGTTGGTGCGTTCCCGTGCTGAATTCGCTCGTCTTT
CACAGGTCATT
mRNA sequenceShow/hide mRNA sequence
ATGGCCCACCTATTCATCTCCGACGAGGAGTTCTCTCGGCACTCCAACGACGCCGCTTTCATGGCGGAGAAGGCCGATGCCTTCATCAAAGGCCTCTACAGCGAGCTCGA
GACCGTCAGAGCCCAAGCCGATGCTGCTTCAATTACTGCGGAGCAGACTTGTTCCCTTCTCGACCAGAAGTTTCTTTCTCTTTCCGCCGAGTTCTCTGACCTCCAGTCTC
AGAATGCACAGCTTCAAACCACCCTTGAGCTCAGACTCTCCGAGCTCGCCGAAGTCAAATCCCAAAAACACCAACTCAATTTACTTTCGATTGGGAAGGATGGGGAGATA
GAGAGGCTAAATACAGAGTTATCCGAACTGCATAAATCAAAAAGGCAGTTGATGGAGCTCATTGAGCAGAAGGATTTAGAAATTGGTGAAAAAGATGCCACTATAAAGTC
TTATCTTGATAAGATTGTAAATTTATCTGAAACGGCTGCTCAAAGAGAAGCCCGTTTAAGTGAGGTCGACATGGAGTTGGTGCGTTCCCGTGCTGAATTCGCTCGTCTTT
CACAGGTCATT
Protein sequenceShow/hide protein sequence
MAHLFISDEEFSRHSNDAAFMAEKADAFIKGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEI
ERLNTELSELHKSKRQLMELIEQKDLEIGEKDATIKSYLDKIVNLSETAAQREARLSEVDMELVRSRAEFARLSQVI