; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010874 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010874
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSquamosa promoter-binding-like protein
Genome locationscaffold35:2667306..2668782
RNA-Seq ExpressionMS010874
SyntenyMS010874
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009908 - flower development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR036893 - SBP domain superfamily
IPR044817 - Squamosa promoter-binding-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026565.1 Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-4273.19Show/hide
Query:  WGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH
        WG   EE+EEEEE+D     E+GF ++ERK +RA SG R G G GR++V RCQAD CN DL+GAR YHRRHKVCEFH+KAAVVILAGLEQRFCQQCSRFH
Subjt:  WGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH

Query:  AVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST
        +VSEFDETKRSCRRRLAGHNERRRK+L      GQSST
Subjt:  AVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST

XP_022142195.1 squamosa promoter-binding protein 1 [Momordica charantia]1.6e-70100Show/hide
Query:  MASWGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR
        MASWGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR
Subjt:  MASWGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR

Query:  FHAVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST
        FHAVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST
Subjt:  FHAVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST

XP_022926740.1 squamosa promoter-binding-like protein 3 [Cucurbita moschata]9.1e-4273.19Show/hide
Query:  WGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH
        WG   EE+EEEEEE+     E+GF ++ERK +RA SG R G G GR++V RCQAD CN DL+GAR YHRRHKVCEFH+KAAVVILAGLEQRFCQQCSRFH
Subjt:  WGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH

Query:  AVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST
        +VSEFDETKRSCRRRLAGHNERRRK+L      GQSST
Subjt:  AVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST

XP_023004048.1 squamosa promoter-binding-like protein 3 [Cucurbita maxima]4.1e-4275.36Show/hide
Query:  WGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH
        WG   EE+EEEEEED     EVGF E+ERK +RA+S  R G G GR++VARCQAD CN DL+GAR YHRRHKVCEFH+KAAVVILAGLEQRFCQQCSRFH
Subjt:  WGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH

Query:  AVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST
        +VSEFDETKRSCRRRLAGHNERRRK+L      GQSST
Subjt:  AVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST

XP_038880830.1 squamosa promoter-binding protein 1-like [Benincasa hispida]9.7e-4480.47Show/hide
Query:  EEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKR
        EE++D     E+GF E+ER+ R AL+GGR G G GR TVARCQADGCNADLS ARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFD+TKR
Subjt:  EEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKR

Query:  SCRRRLAGHNERRRKSLSSEFHGGQSST
        SCRRRLAGHNERRRK L  +FH GQSST
Subjt:  SCRRRLAGHNERRRKSLSSEFHGGQSST

TrEMBL top hitse value%identityAlignment
A0A0A0KK74 SBP-type domain-containing protein3.2e-4072.66Show/hide
Query:  EEEEDGGGGGEVGFGEEERKIRRALSGGR-CGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKR
        ++++D     E+GF + ER+ R  L+  R  GG GRSTVARCQADGCNADL+GA+PYHRRHKVCEFH++AAVVILAGLEQRFCQQCSRFHA+SEFD+TKR
Subjt:  EEEEDGGGGGEVGFGEEERKIRRALSGGR-CGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKR

Query:  SCRRRLAGHNERRRKSLSSEFHGGQSST
        SCR RLAGHNERRRK L  +FH GQSST
Subjt:  SCRRRLAGHNERRRKSLSSEFHGGQSST

A0A1S3AZN8 squamosa promoter-binding protein 11.3e-4173.38Show/hide
Query:  SWGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGR-CGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRF
        SW     +D+++++ D     EVGF + ER+ R  L+ GR  GG GRSTVARCQADGCNADL+GARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRF
Subjt:  SWGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGR-CGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRF

Query:  HAVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST
        HAVSEFD+TKRSCR RLAGHNERRRK L  +FH GQSST
Subjt:  HAVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST

A0A6J1CK81 squamosa promoter-binding protein 17.7e-71100Show/hide
Query:  MASWGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR
        MASWGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR
Subjt:  MASWGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR

Query:  FHAVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST
        FHAVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST
Subjt:  FHAVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST

A0A6J1EFR3 Squamosa promoter-binding-like protein4.4e-4273.19Show/hide
Query:  WGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH
        WG   EE+EEEEEE+     E+GF ++ERK +RA SG R G G GR++V RCQAD CN DL+GAR YHRRHKVCEFH+KAAVVILAGLEQRFCQQCSRFH
Subjt:  WGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH

Query:  AVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST
        +VSEFDETKRSCRRRLAGHNERRRK+L      GQSST
Subjt:  AVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST

A0A6J1KYC6 Squamosa promoter-binding-like protein2.0e-4275.36Show/hide
Query:  WGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH
        WG   EE+EEEEEED     EVGF E+ERK +RA+S  R G G GR++VARCQAD CN DL+GAR YHRRHKVCEFH+KAAVVILAGLEQRFCQQCSRFH
Subjt:  WGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH

Query:  AVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST
        +VSEFDETKRSCRRRLAGHNERRRK+L      GQSST
Subjt:  AVSEFDETKRSCRRRLAGHNERRRKSLSSEFHGGQSST

SwissProt top hitse value%identityAlignment
P93015 Squamosa promoter-binding-like protein 32.0e-2860Show/hide
Query:  EEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFD
        EE+EEEE ED     E  F EEE   ++        G   S+   CQ + C AD+S A+ YH+RHKVC+FHAKA  V ++GL QRFCQQCSRFHA+SEFD
Subjt:  EEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFD

Query:  ETKRSCRRRLAGHNERRRKS
        E KRSCRRRLAGHNERRRKS
Subjt:  ETKRSCRRRLAGHNERRRKS

Q0E3F8 Squamosa promoter-binding-like protein 57.8e-2857.85Show/hide
Query:  GGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRL
        GG G E+G G         L  G    A      RCQA+GC ADLS A+ YHRRHKVC+FHAKAA V+ AG +QRFCQQCSRFH ++EFDE KRSCR+RL
Subjt:  GGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRL

Query:  AGHNERRRKSLSSEFHGGQSS
          HN RRRK  +    GGQSS
Subjt:  AGHNERRRKSLSSEFHGGQSS

Q38741 Squamosa promoter-binding protein 13.7e-3059.5Show/hide
Query:  PEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEF
        P   E+ EEED         GE+ +K R     G+   A  ST   CQ + C A+++ A+PYHRRHKVCEFHAKA VV+ +GL+QRFCQQCSRFH +SEF
Subjt:  PEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEF

Query:  DETKRSCRRRLAGHNERRRKS
        DE KRSCRRRLAGHNERRRKS
Subjt:  DETKRSCRRRLAGHNERRRKS

Q8GXL3 Squamosa promoter-binding-like protein 85.4e-2965.26Show/hide
Query:  KIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK
        ++ R    G  G A   +  RCQA+GCNADLS A+ YHRRHKVCEFH+KA+ V+ AGL QRFCQQCSRFH +SEFD  KRSCR+RLA HN RRRK
Subjt:  KIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK

Q9S7A9 Squamosa promoter-binding-like protein 41.3e-2760.19Show/hide
Query:  EEERKIRRALSGGRCGGAGRSTVAR-CQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK
        +EE ++ R    G  G   R    R CQ D C AD+  A+ YHRRHKVCE HAKA+ V L+GL QRFCQQCSRFH + EFDE KRSCRRRLAGHNERRRK
Subjt:  EEERKIRRALSGGRCGGAGRSTVAR-CQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK

Query:  SLSSEFHG
        S     +G
Subjt:  SLSSEFHG

Arabidopsis top hitse value%identityAlignment
AT1G02065.1 squamosa promoter binding protein-like 83.8e-3065.26Show/hide
Query:  KIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK
        ++ R    G  G A   +  RCQA+GCNADLS A+ YHRRHKVCEFH+KA+ V+ AGL QRFCQQCSRFH +SEFD  KRSCR+RLA HN RRRK
Subjt:  KIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK

AT1G53160.1 squamosa promoter binding protein-like 49.4e-2960.19Show/hide
Query:  EEERKIRRALSGGRCGGAGRSTVAR-CQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK
        +EE ++ R    G  G   R    R CQ D C AD+  A+ YHRRHKVCE HAKA+ V L+GL QRFCQQCSRFH + EFDE KRSCRRRLAGHNERRRK
Subjt:  EEERKIRRALSGGRCGGAGRSTVAR-CQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK

Query:  SLSSEFHG
        S     +G
Subjt:  SLSSEFHG

AT1G53160.2 squamosa promoter binding protein-like 49.4e-2960.19Show/hide
Query:  EEERKIRRALSGGRCGGAGRSTVAR-CQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK
        +EE ++ R    G  G   R    R CQ D C AD+  A+ YHRRHKVCE HAKA+ V L+GL QRFCQQCSRFH + EFDE KRSCRRRLAGHNERRRK
Subjt:  EEERKIRRALSGGRCGGAGRSTVAR-CQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK

Query:  SLSSEFHG
        S     +G
Subjt:  SLSSEFHG

AT1G69170.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.8e-2772.97Show/hide
Query:  CQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK
        CQ  GC+ DLS ++ YH+RH+VCE H+K +VVI+ GLEQRFCQQCSRFH +SEFD+ KRSCRRRLAGHNERRRK
Subjt:  CQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHNERRRK

AT2G33810.1 squamosa promoter binding protein-like 31.5e-2960Show/hide
Query:  EEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFD
        EE+EEEE ED     E  F EEE   ++        G   S+   CQ + C AD+S A+ YH+RHKVC+FHAKA  V ++GL QRFCQQCSRFHA+SEFD
Subjt:  EEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFD

Query:  ETKRSCRRRLAGHNERRRKS
        E KRSCRRRLAGHNERRRKS
Subjt:  ETKRSCRRRLAGHNERRRKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTTGGGGGGGCACGCCTGAAGAGGATGAGGAGGAGGAGGAAGAAGACGGCGGCGGCGGCGGAGAAGTAGGGTTTGGGGAAGAGGAGAGAAAGATCAGGAGAGC
TTTAAGCGGCGGTCGGTGTGGCGGAGCAGGGAGGTCAACGGTGGCGCGTTGCCAAGCCGACGGCTGTAATGCCGATCTGAGCGGCGCCCGGCCGTACCACCGCCGCCACA
AGGTCTGTGAGTTCCATGCCAAGGCGGCGGTCGTCATTTTGGCCGGATTGGAGCAGCGCTTTTGCCAGCAGTGTAGCAGGTTTCATGCGGTTTCAGAGTTCGATGAGACC
AAGAGAAGCTGCCGGAGGCGTTTGGCCGGACACAACGAACGCCGGCGAAAAAGCTTATCCTCGGAGTTCCATGGCGGACAATCCTCCACC
mRNA sequenceShow/hide mRNA sequence
ATGGCATCTTGGGGGGGCACGCCTGAAGAGGATGAGGAGGAGGAGGAAGAAGACGGCGGCGGCGGCGGAGAAGTAGGGTTTGGGGAAGAGGAGAGAAAGATCAGGAGAGC
TTTAAGCGGCGGTCGGTGTGGCGGAGCAGGGAGGTCAACGGTGGCGCGTTGCCAAGCCGACGGCTGTAATGCCGATCTGAGCGGCGCCCGGCCGTACCACCGCCGCCACA
AGGTCTGTGAGTTCCATGCCAAGGCGGCGGTCGTCATTTTGGCCGGATTGGAGCAGCGCTTTTGCCAGCAGTGTAGCAGGTTTCATGCGGTTTCAGAGTTCGATGAGACC
AAGAGAAGCTGCCGGAGGCGTTTGGCCGGACACAACGAACGCCGGCGAAAAAGCTTATCCTCGGAGTTCCATGGCGGACAATCCTCCACC
Protein sequenceShow/hide protein sequence
MASWGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCGGAGRSTVARCQADGCNADLSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDET
KRSCRRRLAGHNERRRKSLSSEFHGGQSST