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MS010921 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010921
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBEST Arabidopsis thaliana protein match is: transcription regulators .
Genome locationscaffold35:2957484..2958028
RNA-Seq ExpressionMS010921
SyntenyMS010921
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581368.1 hypothetical protein SDJN03_21370, partial [Cucurbita argyrosperma subsp. sororia]2.2e-5475.84Show/hide
Query:  MQGRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDC
        MQG+QS  FWNAVLF+HKLKLKLEAIEREYSNLL+ KRE L NSVK  H PKEV+VEK+G+E RV++RCEKGGDRLV+VLEAFDKMGLNVL+A+VSC++C
Subjt:  MQGRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDC

Query:  FSMEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI
        FSMEA+AVAE EQSL++ DI EAIN AIDGK LAANQ Q+E PE++D+I
Subjt:  FSMEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI

KAG7034655.1 hypothetical protein SDJN02_04385, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-5375.51Show/hide
Query:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS
        G+QS  FWNAVLF+HKLKLKLEAIEREYSNLL+ KRE L NSVK  H PKEV+VEK+G+E RV++RCEKGGDRLV+VLEAFDKMGLNVL+A+VSC++CFS
Subjt:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS

Query:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI
        MEA+AVAE EQSL++ DI EAIN AIDGK LAANQ Q+E PE++D+I
Subjt:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI

XP_022142089.1 uncharacterized protein LOC111012303 [Momordica charantia]8.1e-7399.32Show/hide
Query:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS
        GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS
Subjt:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS

Query:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI
        MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEEND+I
Subjt:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI

XP_022978770.1 uncharacterized protein LOC111478631 [Cucurbita maxima]1.1e-5376.19Show/hide
Query:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS
        G+QS  FWNAVLF+HKLKLKLEAIEREYSNLL+ KRE L NSVK  H PKEV+VEK+G+EFRV++RCEKGGDRLV+VLEAFDKMGLNVL+A+VSC++CFS
Subjt:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS

Query:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI
        MEA+AVAE EQSL++ DI EAIN AIDGK LAANQ Q+E PE++D+I
Subjt:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI

XP_023544520.1 uncharacterized protein LOC111804071 [Cucurbita pepo subsp. pepo]1.9e-5375.51Show/hide
Query:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS
        G+QS  FWNAVLF+HKLKLKLEAIEREYSNLL+ KRE L NSVK  H PKEV+VEK+G+EFRV++RCEKGGDRLV+VLEAFDKMGLNVL+A+VSC++CFS
Subjt:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS

Query:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI
        MEA+AVAE EQSL++ DI EAIN AI+GK LAANQ Q+E PE++D+I
Subjt:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI

TrEMBL top hitse value%identityAlignment
A0A5A7UBN8 Uncharacterized protein4.0e-4972.97Show/hide
Query:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS
        GRQ+CVFWNAVLFIHKLKLKLEAIEREYSNLL  KRE L NS+K FH  KEV+VEK G+EFRV++RCEKGGDRLVSVLEAF+KMGLNV+EARVSCT+CF 
Subjt:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS

Query:  MEAVAVAE-VEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI
        MEA+AVAE   Q L++ DI +AINVAID KLLA NQ   +IP  + ++
Subjt:  MEAVAVAE-VEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI

A0A6J1CKK9 uncharacterized protein LOC1110123033.9e-7399.32Show/hide
Query:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS
        GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS
Subjt:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS

Query:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI
        MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEEND+I
Subjt:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI

A0A6J1ED01 uncharacterized protein LOC1114332044.5e-5374.83Show/hide
Query:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS
        G+QS  FWNAVLF+HKLKLKLEAIEREYSNLL+ KRE L NSVK  H PKEV+VEK+G+E RV++RCEKGGDRLV+VLEAFDKMGLNVL+A+VSC++CFS
Subjt:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS

Query:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI
        MEA+AVAE EQSL++ DI EAIN AIDGK LAANQ Q+E P+++D+I
Subjt:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI

A0A6J1IR65 uncharacterized protein LOC1114786315.3e-5476.19Show/hide
Query:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS
        G+QS  FWNAVLF+HKLKLKLEAIEREYSNLL+ KRE L NSVK  H PKEV+VEK+G+EFRV++RCEKGGDRLV+VLEAFDKMGLNVL+A+VSC++CFS
Subjt:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS

Query:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI
        MEA+AVAE EQSL++ DI EAIN AIDGK LAANQ Q+E PE++D+I
Subjt:  MEAVAVAEVEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI

E5GC31 Uncharacterized protein4.0e-4972.97Show/hide
Query:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS
        GRQ+CVFWNAVLFIHKLKLKLEAIEREYSNLL  KRE L NS+K FH  KEV+VEK G+EFRV++RCEKGGDRLVSVLEAF+KMGLNV+EARVSCT+CF 
Subjt:  GRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFS

Query:  MEAVAVAE-VEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI
        MEA+AVAE   Q L++ DI +AINVAID KLLA NQ   +IP  + ++
Subjt:  MEAVAVAE-VEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29270.1 unknown protein5.0e-2042.4Show/hide
Query:  QSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFSME
        QS V   A+L+I  LKL++EA++REY +L   K+E       S H  +EV+VEKIG+ F+V+++  +G + LV++LEAF++MGLNV +AR SC D F+ME
Subjt:  QSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFSME

Query:  AVAVAEVEQSL-DVRDIREAINVAI
        A+   + +  L  V D+ + +  A+
Subjt:  AVAVAEVEQSL-DVRDIREAINVAI

AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)2.6e-0835.2Show/hide
Query:  VFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKE--VEVEKIGKEFRVRLRCEKG-GDRLVSVLEAFDKMGLNVLEARVSCTDCFSME
        +  +A  +I KLK K+E   ++              S      PK   V VE + K F + +   K     LVSVLEAF+ +GLNVLEAR SCTD FS+ 
Subjt:  VFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKE--VEVEKIGKEFRVRLRCEKG-GDRLVSVLEAFDKMGLNVLEARVSCTDCFSME

Query:  AVAVA-EVEQSLDVRDIREAINVAI
        A+ +  E  +++D   +++A+  AI
Subjt:  AVAVA-EVEQSLDVRDIREAINVAI

AT3G56220.1 transcription regulators7.5e-0831.5Show/hide
Query:  QSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKG-GDRLVSVLEAFDKMGLNVLEARVSCTDCFSM
        ++ +  +A  +I KLK K+E I    +N   +++    +S  +      V VE + K F +++   K     LV VLE F+ +GL+V+EARVSCTD FS+
Subjt:  QSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKG-GDRLVSVLEAFDKMGLNVLEARVSCTDCFSM

Query:  EAVAVAEVEQS--LDVRDIREAINVAI
         A+  +  +    +D   +++A+  AI
Subjt:  EAVAVAEVEQS--LDVRDIREAINVAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGGGAGACAAAGCTGTGTCTTCTGGAATGCTGTTCTCTTCATTCATAAGCTCAAACTCAAGCTGGAGGCGATTGAGAGAGAGTATTCAAATCTATTGGCTGCGAA
AAGAGAAATCTTGAACAACTCTGTGAAGTCTTTTCATTTCCCCAAGGAGGTGGAGGTGGAGAAGATTGGAAAAGAATTTAGAGTGAGATTGAGATGCGAAAAGGGAGGGG
ACAGATTGGTTTCAGTTTTGGAGGCGTTTGACAAAATGGGTCTAAATGTTCTTGAAGCTAGAGTTTCGTGTACGGATTGTTTTTCCATGGAAGCCGTTGCTGTAGCTGAA
GTTGAACAATCGCTTGATGTAAGAGACATAAGGGAAGCTATTAACGTAGCCATTGATGGGAAATTGTTAGCTGCAAATCAGATTCAGCAAGAAATTCCAGAGGAAAATGA
TAAAATT
mRNA sequenceShow/hide mRNA sequence
ATGCAGGGGAGACAAAGCTGTGTCTTCTGGAATGCTGTTCTCTTCATTCATAAGCTCAAACTCAAGCTGGAGGCGATTGAGAGAGAGTATTCAAATCTATTGGCTGCGAA
AAGAGAAATCTTGAACAACTCTGTGAAGTCTTTTCATTTCCCCAAGGAGGTGGAGGTGGAGAAGATTGGAAAAGAATTTAGAGTGAGATTGAGATGCGAAAAGGGAGGGG
ACAGATTGGTTTCAGTTTTGGAGGCGTTTGACAAAATGGGTCTAAATGTTCTTGAAGCTAGAGTTTCGTGTACGGATTGTTTTTCCATGGAAGCCGTTGCTGTAGCTGAA
GTTGAACAATCGCTTGATGTAAGAGACATAAGGGAAGCTATTAACGTAGCCATTGATGGGAAATTGTTAGCTGCAAATCAGATTCAGCAAGAAATTCCAGAGGAAAATGA
TAAAATT
Protein sequenceShow/hide protein sequence
MQGRQSCVFWNAVLFIHKLKLKLEAIEREYSNLLAAKREILNNSVKSFHFPKEVEVEKIGKEFRVRLRCEKGGDRLVSVLEAFDKMGLNVLEARVSCTDCFSMEAVAVAE
VEQSLDVRDIREAINVAIDGKLLAANQIQQEIPEENDKI