; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010940 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010940
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L34, chloroplastic
Genome locationscaffold35:3097665..3098579
RNA-Seq ExpressionMS010940
SyntenyMS010940
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000271 - Ribosomal protein L34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052628.1 50S ribosomal protein L34 [Cucumis melo var. makuwa]3.0e-5481.94Show/hide
Query:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWVSNGA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL C                 SLGLDW+S++GVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

XP_004134668.1 50S ribosomal protein L34, chloroplastic [Cucumis sativus]4.6e-6389.68Show/hide
Query:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA
        MAAISVLSTPWVS GA+AVRVPSASLV STGSR  CSVSLNT NN SARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S++GVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

XP_008439748.1 PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]2.2e-6592.26Show/hide
Query:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWVSNGA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S++GVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

XP_022142342.1 50S ribosomal protein L34, chloroplastic [Momordica charantia]5.1e-7098.06Show/hide
Query:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA
        MAAISVLSTPWV +GAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRI VGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

XP_038883793.1 50S ribosomal protein L34, chloroplastic [Benincasa hispida]5.5e-6491.61Show/hide
Query:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWVS GA AVRVPSASLVISTG R CCSVSLNTANNTSARSGLL CSFL SSSLSCSSSFSG SLGLDW+S+IGVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

TrEMBL top hitse value%identityAlignment
A0A0A0KI92 Uncharacterized protein2.2e-6389.68Show/hide
Query:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA
        MAAISVLSTPWVS GA+AVRVPSASLV STGSR  CSVSLNT NN SARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S++GVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

A0A1S3AZG6 50S ribosomal protein L34, chloroplastic1.1e-6592.26Show/hide
Query:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWVSNGA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S++GVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

A0A5A7UBQ8 50S ribosomal protein L341.5e-5481.94Show/hide
Query:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWVSNGA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL C                 SLGLDW+S++GVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

A0A5D3CSJ7 50S ribosomal protein L341.1e-6592.26Show/hide
Query:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWVSNGA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S++GVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

A0A6J1CMH5 50S ribosomal protein L34, chloroplastic2.5e-7098.06Show/hide
Query:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA
        MAAISVLSTPWV +GAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRI VGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

SwissProt top hitse value%identityAlignment
B5EJJ2 50S ribosomal protein L348.6e-0480Show/hide
Query:  RTHGFRRRMRTTSGRAVLKRRRAKGRKVLC
        RTHGFR RM T SGR VLKRRRAKGR+ LC
Subjt:  RTHGFRRRMRTTSGRAVLKRRRAKGRKVLC

B7J3D6 50S ribosomal protein L348.6e-0480Show/hide
Query:  RTHGFRRRMRTTSGRAVLKRRRAKGRKVLC
        RTHGFR RM T SGR VLKRRRAKGR+ LC
Subjt:  RTHGFRRRMRTTSGRAVLKRRRAKGRKVLC

P82244 50S ribosomal protein L34, chloroplastic2.8e-3464.74Show/hide
Query:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFL-PSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKA
        MA +S+LST      A+  R PSASL   TGSR+  +    + N  SARSG L CSFL PSSSL  SS+FSG SLGLD  S  GV   + R  VVRAGKA
Subjt:  MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFL-PSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKA

Query:  ALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        ALC TKR+RSRKSLARTHGFR RM TTSGRA+LKRRRAKGRK+LCTK+ PSSGK A
Subjt:  ALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

Q9LP37 50S ribosomal protein L34, chloroplastic2.7e-2960.65Show/hide
Query:  AAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRI-GVGQGKGRSLVVRAGKAA
        +A S L  P  SNG +   VPSASL + TG R   S     +  +SA S LL CSFL SS +S +S FSG S+  D +S+  G+   + R LVVRAGKAA
Subjt:  AAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRI-GVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKR+RSRKSLARTHGFRRRMRTTSGRA +KRRRAKGR  LC KS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

Arabidopsis top hitse value%identityAlignment
AT1G29070.1 Ribosomal protein L341.9e-3060.65Show/hide
Query:  AAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRI-GVGQGKGRSLVVRAGKAA
        +A S L  P  SNG +   VPSASL + TG R   S     +  +SA S LL CSFL SS +S +S FSG S+  D +S+  G+   + R LVVRAGKAA
Subjt:  AAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRI-GVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
        LCQTKR+RSRKSLARTHGFRRRMRTTSGRA +KRRRAKGR  LC KS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCGATATCAGTGTTATCGACCCCATGGGTTTCAAACGGAGCTGTGGCTGTCCGCGTTCCCTCAGCTTCTCTTGTAATCTCCACTGGCTCTAGAAGTTGCTGCTC
CGTATCTCTCAACACTGCAAACAACACTTCCGCTCGTTCTGGATTGCTCCGTTGTTCGTTTCTTCCTTCTTCCTCCCTTTCATGCTCTTCATCTTTTTCAGGTTTTTCTT
TGGGTTTGGACTGGAACTCCAGAATTGGGGTTGGACAAGGAAAGGGTCGGAGCTTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGT
AAATCCTTAGCTCGGACTCATGGTTTTCGCCGACGAATGCGGACCACCAGTGGTAGAGCTGTTCTTAAGCGCAGGCGTGCCAAGGGGAGGAAGGTCCTCTGCACGAAGTC
TTACCCTAGTAGCGGAAAGGGTGCT
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCGATATCAGTGTTATCGACCCCATGGGTTTCAAACGGAGCTGTGGCTGTCCGCGTTCCCTCAGCTTCTCTTGTAATCTCCACTGGCTCTAGAAGTTGCTGCTC
CGTATCTCTCAACACTGCAAACAACACTTCCGCTCGTTCTGGATTGCTCCGTTGTTCGTTTCTTCCTTCTTCCTCCCTTTCATGCTCTTCATCTTTTTCAGGTTTTTCTT
TGGGTTTGGACTGGAACTCCAGAATTGGGGTTGGACAAGGAAAGGGTCGGAGCTTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGT
AAATCCTTAGCTCGGACTCATGGTTTTCGCCGACGAATGCGGACCACCAGTGGTAGAGCTGTTCTTAAGCGCAGGCGTGCCAAGGGGAGGAAGGTCCTCTGCACGAAGTC
TTACCCTAGTAGCGGAAAGGGTGCT
Protein sequenceShow/hide protein sequence
MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSR
KSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA