; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010942 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010942
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S Ribosomal protein
Genome locationscaffold35:3106169..3108900
RNA-Seq ExpressionMS010942
SyntenyMS010942
Gene Ontology termsGO:0005525 - GTP binding (molecular function)
InterPro domainsIPR011719 - Conserved hypothetical protein CHP02058
IPR037103 - Tubulin/FtsZ-like, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439752.1 PREDICTED: uncharacterized protein LOC103484457 isoform X1 [Cucumis melo]3.1e-8081.54Show/hide
Query:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA
        MTGSI++N+ F    + RFR Y  S  N  SS  H +CSLTRP ISRLIK TA SSMEVE+GG+SA V ST  PMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGV+F +MKLQIKLGVP +LQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_022142213.1 uncharacterized protein LOC111012382 isoform X1 [Momordica charantia]5.8e-10398.97Show/hide
Query:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA
        MTGSIVVNVPFPWAIELRFR YLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGG+SAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA
Subjt:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_022925764.1 uncharacterized protein LOC111433074 [Cucurbita moschata]1.6e-8485.13Show/hide
Query:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA
        MTGS V+N+ FP   +LRFR Y  SN++ SSSSAH +CS TRPPISRL+K TAASSMEVE+GGKSA VGST  PMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGVTF +MKLQIKLGVP +LQQSLDIEKVKSVFPYGKI+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_023544561.1 uncharacterized protein LOC111804102 [Cucurbita pepo subsp. pepo]2.7e-8485.13Show/hide
Query:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA
        MTGSIV+N+ FP   +LRFR Y  SN++ SSSSAH +CS TRP ISRL+K TAASSMEVE+GGKSA VGST  PMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGVTF +MKLQIKLGVP +LQQSLDIEKVKSVFPYGKI+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_038883708.1 uncharacterized protein LOC120074614 isoform X1 [Benincasa hispida]3.3e-8283.08Show/hide
Query:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA
        MTGSIV+N  F    + RFR Y  S  N  S SAH +CSLTRP ISRL+K TA SSMEVE+GGKSA  GST  PMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGVTF +MKLQIKLGVP +LQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

TrEMBL top hitse value%identityAlignment
A0A0A0KNJ4 Uncharacterized protein1.5e-8081.54Show/hide
Query:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA
        MT SI++N+ F    + RFR Y  S  N  SSS H +CSLTRP ISRLIK TA SSMEVE+GG+SA V ST  PMKLLFVEMGVGYDQHGQDVTAAAMRA
Subjt:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGV+F +MKLQIKLGVP +LQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A1S3B079 uncharacterized protein LOC103484457 isoform X11.5e-8081.54Show/hide
Query:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA
        MTGSI++N+ F    + RFR Y  S  N  SS  H +CSLTRP ISRLIK TA SSMEVE+GG+SA V ST  PMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGV+F +MKLQIKLGVP +LQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1CKY1 uncharacterized protein LOC111012382 isoform X27.9e-7496.03Show/hide
Query:  ISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDI
        + +L  ATAASSMEVEEGG+SAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDI
Subjt:  ISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDI

Query:  EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1CMQ6 uncharacterized protein LOC111012382 isoform X12.8e-10398.97Show/hide
Query:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA
        MTGSIVVNVPFPWAIELRFR YLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGG+SAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA
Subjt:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1ED44 uncharacterized protein LOC1114330747.6e-8585.13Show/hide
Query:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA
        MTGS V+N+ FP   +LRFR Y  SN++ SSSSAH +CS TRPPISRL+K TAASSMEVE+GGKSA VGST  PMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGVTF +MKLQIKLGVP +LQQSLDIEKVKSVFPYGKI+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29040.1 unknown protein8.4e-6067.61Show/hide
Query:  RPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIP
        RP   S++++  S  HF      P ISR IK  A S+ME     ++   G   + MKLLFVEMGVGYDQHGQDVT+AAM+AC++AISSNSIPAFRRGSIP
Subjt:  RPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIP

Query:  GVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        GV+F +MKLQIKLGVP +L Q LD++KVKS+FPYGKI+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  GVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

AT1G29040.2 unknown protein3.9e-4960.23Show/hide
Query:  RPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIP
        RP   S++++  S  HF      P ISR IK  A S+ME     ++   G   + MKLLFVEMGVGYDQHGQDVT+AAM+AC               SIP
Subjt:  RPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIP

Query:  GVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        GV+F +MKLQIKLGVP +L Q LD++KVKS+FPYGKI+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  GVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

AT1G29040.3 unknown protein3.8e-2056.12Show/hide
Query:  RPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGS
        RP   S++++  S  HF      P ISR IK  A S+ME     ++   G   + MKLLFVEMGVGYDQHGQDVT+AAM+AC++AISSNSIPAFRRG+
Subjt:  RPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGS

AT1G29040.4 unknown protein8.4e-6067.61Show/hide
Query:  RPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIP
        RP   S++++  S  HF      P ISR IK  A S+ME     ++   G   + MKLLFVEMGVGYDQHGQDVT+AAM+AC++AISSNSIPAFRRGSIP
Subjt:  RPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIP

Query:  GVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        GV+F +MKLQIKLGVP +L Q LD++KVKS+FPYGKI+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  GVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGCTCCATAGTTGTAAATGTGCCATTTCCTTGGGCAATTGAACTCAGGTTTCGTCCTTACCTTCATTCCAATAAGAATCGATCATCATCATCTGCGCATTTTCT
CTGCTCTCTCACACGGCCTCCAATTTCTCGCCTTATCAAAGCTACTGCTGCGTCGTCCATGGAGGTTGAGGAAGGTGGAAAATCTGCAGCTGTTGGCAGCACAGCTTCGC
CCATGAAGCTCTTGTTCGTCGAGATGGGTGTCGGATACGATCAACATGGCCAAGATGTCACGGCAGCTGCTATGCGGGCCTGCAGGGATGCCATATCTTCCAATTCGATT
CCAGCATTCCGTAGAGGTTCCATTCCTGGAGTCACATTTGATCAGATGAAACTTCAGATCAAACTTGGAGTACCACAGACACTTCAACAATCCTTGGATATTGAAAAAGT
CAAGTCTGTCTTCCCATATGGAAAGATTCTGAATGTTGAGGTCGTTGATGGTGGCTTAATATGCTCCAGCGGTGTGCACGTGGAAGAAATGGGAGACAAAAATGATGACT
GTTATATAGTAAATGCTGCTGTATATGTTGGCTAT
mRNA sequenceShow/hide mRNA sequence
ATGACAGGCTCCATAGTTGTAAATGTGCCATTTCCTTGGGCAATTGAACTCAGGTTTCGTCCTTACCTTCATTCCAATAAGAATCGATCATCATCATCTGCGCATTTTCT
CTGCTCTCTCACACGGCCTCCAATTTCTCGCCTTATCAAAGCTACTGCTGCGTCGTCCATGGAGGTTGAGGAAGGTGGAAAATCTGCAGCTGTTGGCAGCACAGCTTCGC
CCATGAAGCTCTTGTTCGTCGAGATGGGTGTCGGATACGATCAACATGGCCAAGATGTCACGGCAGCTGCTATGCGGGCCTGCAGGGATGCCATATCTTCCAATTCGATT
CCAGCATTCCGTAGAGGTTCCATTCCTGGAGTCACATTTGATCAGATGAAACTTCAGATCAAACTTGGAGTACCACAGACACTTCAACAATCCTTGGATATTGAAAAAGT
CAAGTCTGTCTTCCCATATGGAAAGATTCTGAATGTTGAGGTCGTTGATGGTGGCTTAATATGCTCCAGCGGTGTGCACGTGGAAGAAATGGGAGACAAAAATGATGACT
GTTATATAGTAAATGCTGCTGTATATGTTGGCTAT
Protein sequenceShow/hide protein sequence
MTGSIVVNVPFPWAIELRFRPYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVEEGGKSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSI
PAFRRGSIPGVTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY