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MS010959 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010959
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSplicing factor subunit
Genome locationscaffold35:3230364..3230729
RNA-Seq ExpressionMS010959
SyntenyMS010959
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0016311 - dephosphorylation (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0004674 - protein serine/threonine kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016791 - phosphatase activity (molecular function)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EAZ07153.1 hypothetical protein OsI_29403 [Oryza sativa Indica Group]1.3e-3386.75Show/hide
Query:  GQGANIDFSYSMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        G+G+  + S  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYF+IAENESIGRERYNFMQ
Subjt:  GQGANIDFSYSMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

KAB1219260.1 hypothetical protein CJ030_MR3G001257 [Morella rubra]1.3e-3397.3Show/hide
Query:  SMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
        ++QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
Subjt:  SMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV

MQM06478.1 hypothetical protein [Colocasia esculenta]1.3e-3387.06Show/hide
Query:  LDGQGANIDFSYSMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        L+G  A +D    MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPI+AYFA+AENESIGRERYNFMQ
Subjt:  LDGQGANIDFSYSMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

RWR96626.1 Splicing factor 3B subunit 5/RDS3 complex subunit 10 [Cinnamomum micranthum f. kanehirae]6.0e-34100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV

XP_021911310.1 uncharacterized protein At4g14342-like [Carica papaya]1.3e-3397.26Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFAIAENESIGRERYNFMQV
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV

TrEMBL top hitse value%identityAlignment
A0A2N9EJH4 Splicing factor subunit5.0e-3498.63Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGRERYNFMQV
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV

A0A3S3R9V2 Splicing factor subunit2.9e-34100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV

A0A6A1W901 Uncharacterized protein6.5e-3497.3Show/hide
Query:  SMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
        ++QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
Subjt:  SMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV

A0A803R3K1 Uncharacterized protein5.0e-3498.63Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGRERYNFMQV
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV

J3MTF8 Uncharacterized protein3.8e-3487.65Show/hide
Query:  GANIDFSYSMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        G+ ++ S  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYF+IAENESIGRERYNFMQ
Subjt:  GANIDFSYSMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143425.7e-3594.44Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Q56K13 Splicing factor 3B subunit 53.6e-2163.77Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R R+N M+
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Q9BWJ5 Splicing factor 3B subunit 53.6e-2163.77Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R R+N M+
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Q9LW64 Uncharacterized protein At3g233251.7e-3493.06Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Q9VHI4 Splicing factor 3B subunit 51.2e-2167.65Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  R R+N M+
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 101.2e-3593.06Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 104.0e-3694.44Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGTCATTGCTTGAGGTTGCTTTAGATGGACAGGGCGCTAATATTGATTTCTCATATTCGATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCA
GGCTAAATATGTGGGAACTGGGCATGCTGACTTAAATAGATTTGAATGGGCCGTCAATATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATCCTAGCAT
ACTTTGCTATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTTATGCAGGTT
mRNA sequenceShow/hide mRNA sequence
CTGTCATTGCTTGAGGTTGCTTTAGATGGACAGGGCGCTAATATTGATTTCTCATATTCGATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCA
GGCTAAATATGTGGGAACTGGGCATGCTGACTTAAATAGATTTGAATGGGCCGTCAATATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATCCTAGCAT
ACTTTGCTATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTTATGCAGGTT
Protein sequenceShow/hide protein sequence
LSLLEVALDGQGANIDFSYSMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV