; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS010986 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS010986
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-binding protein
Genome locationscaffold35:3432853..3434364
RNA-Seq ExpressionMS010986
SyntenyMS010986
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0012501 - programmed cell death (biological process)
GO:0015693 - magnesium ion transport (biological process)
GO:0098655 - cation transmembrane transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0046873 - metal ion transmembrane transporter activity (molecular function)
InterPro domainsIPR002836 - PDCD5-like
IPR036883 - PDCD5-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142304.1 DNA-binding protein DDB_G0278111 isoform X1 [Momordica charantia]1.3e-2898.72Show/hide
Query:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV
        SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT+
Subjt:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV

XP_022142306.1 DNA-binding protein DDB_G0278111 isoform X2 [Momordica charantia]1.3e-2898.72Show/hide
Query:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV
        SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT+
Subjt:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV

XP_023543162.1 DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita pepo subsp. pepo]1.3e-2898.72Show/hide
Query:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV
        SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT+
Subjt:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV

XP_023543163.1 DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita pepo subsp. pepo]1.3e-2898.72Show/hide
Query:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV
        SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT+
Subjt:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV

XP_038881892.1 DNA-binding protein DDB_G0278111 [Benincasa hispida]1.3e-2898.72Show/hide
Query:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV
        SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT+
Subjt:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV

TrEMBL top hitse value%identityAlignment
A0A6J1CKK4 DNA-binding protein DDB_G0278111 isoform X16.3e-2998.72Show/hide
Query:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV
        SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT+
Subjt:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV

A0A6J1CLT3 DNA-binding protein DDB_G0278111 isoform X26.3e-2998.72Show/hide
Query:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV
        SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT+
Subjt:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV

A0A6J1ECS1 DNA-binding protein DDB_G0278111-like isoform X16.3e-2998.72Show/hide
Query:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV
        SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT+
Subjt:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV

A0A6J1IUM6 DNA-binding protein DDB_G0278111-like isoform X16.3e-2998.72Show/hide
Query:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV
        SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT+
Subjt:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV

A0A6J1IVC3 DNA-binding protein DDB_G0278111-like isoform X26.3e-2998.72Show/hide
Query:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV
        SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT+
Subjt:  SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTV

SwissProt top hitse value%identityAlignment
O13929 Uncharacterized protein C23C4.09c4.9e-1048.72Show/hide
Query:  EERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTK--QTKVTVS
        +E RQ +LSQIL   AR+RL RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LLE+I+ + +K  +TK+ ++
Subjt:  EERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTK--QTKVTVS

O14737 Programmed cell death protein 51.4e-0947.22Show/hide
Query:  ERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKV
        E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V
Subjt:  ERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKV

Q2HJH9 Programmed cell death protein 51.8e-0947.22Show/hide
Query:  ERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKV
        E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V
Subjt:  ERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKV

Q54YS0 DNA-binding protein DDB_G02781113.3e-1458.9Show/hide
Query:  EAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQT
        EA ERRQ +L QIL+  ARERL+RI +VKPEK+R +ED+I+RAAQ GQ+ E+V + +LI+LLEQ++ +T K T
Subjt:  EAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQT

Q5RBT0 Programmed cell death protein 51.4e-0947.22Show/hide
Query:  ERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKV
        E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V
Subjt:  ERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKV

Arabidopsis top hitse value%identityAlignment
AT1G29850.1 double-stranded DNA-binding family protein7.4e-3093.42Show/hide
Query:  EAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT
        EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT
Subjt:  EAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT

AT1G29850.2 double-stranded DNA-binding family protein7.4e-3093.42Show/hide
Query:  EAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT
        EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT
Subjt:  EAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT

AT1G29850.3 double-stranded DNA-binding family protein6.7e-3193.59Show/hide
Query:  EAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTVS
        EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVTVS
Subjt:  EAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTGAAGCAGAGGAACGCAGACAAATGATGCTTAGTCAGATTTTGTCAATGCAAGCAAGAGAAAGACTTGCTCGAATTGCTTTGGTGAAACCTGAGAAGGCAAGAGGTGT
TGAAGATGTTATATTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGGTATCGGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAACCAAACCACGAAACAGA
CTAAAGTCACTGTGAGTTTTCATTGCTTATTTTATGGGTGCCTTCTGAATTATGATATGTTCTTGCTTCTTGCTCTGACGGTTGTCATATATGTTTTCTTCAGATACAGA
GGCGTCGAAGCGTTCTCGAGGATGATGATTAGCAAG
mRNA sequenceShow/hide mRNA sequence
AGTGAAGCAGAGGAACGCAGACAAATGATGCTTAGTCAGATTTTGTCAATGCAAGCAAGAGAAAGACTTGCTCGAATTGCTTTGGTGAAACCTGAGAAGGCAAGAGGTGT
TGAAGATGTTATATTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGGTATCGGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAACCAAACCACGAAACAGA
CTAAAGTCACTGTGAGTTTTCATTGCTTATTTTATGGGTGCCTTCTGAATTATGATATGTTCTTGCTTCTTGCTCTGACGGTTGTCATATATGTTTTCTTCAGATACAGA
GGCGTCGAAGCGTTCTCGAGGATGATGATTAGCAAG
Protein sequenceShow/hide protein sequence
SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTVSFHCLFYGCLLNYDMFLLLALTVVIYVFFRYR
GVEAFSRMMISK