CuGenDBv2

Gene ID	MS011018
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Chromodomain helicase DNA binding protein
Genome location	scaffold35:3625188..3625435
RNA-Seq Expression	MS011018
Synteny	MS011018
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7010499.1 Increased DNA methylation 1, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-15

49.47

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Query:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK
        YG C DVNYQDAW EGV+F  +    +RRIFF +LGDEL VG               DWQR GTWSF+EL+ QCE+   +     +I YEVRA++
Subjt:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK

XP_022148410.1 uncharacterized protein LOC111017066 isoform X1 [Momordica charantia]

2.7e-17

52.63

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Query:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK
        YGLC DVNYQDAW EGVIF  +    +RR+FF +LGDEL+VG               DWQR GTWSF+ELI QCE+   +     +I YEVRA+K
Subjt:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK

XP_022148411.1 uncharacterized protein LOC111017066 isoform X2 [Momordica charantia]

2.7e-17

52.63

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Query:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK
        YGLC DVNYQDAW EGVIF  +    +RR+FF +LGDEL+VG               DWQR GTWSF+ELI QCE+   +     +I YEVRA+K
Subjt:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK

XP_022944090.1 uncharacterized protein LOC111448635 [Cucurbita moschata]

1.5e-15

49.47

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Query:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK
        YG C DVNYQDAW EGV+F  +    +RRIFF +LGDEL VG               DWQR GTWSF+EL+ QCE+   +     +I YEVRA++
Subjt:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK

XP_022986211.1 uncharacterized protein LOC111484026 [Cucurbita maxima]

1.5e-15

49.47

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Query:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK
        YG C DVNYQDAW EGV+F  +    +RRIFF +LGDEL VG               DWQR GTWSF+EL+ QCE+   +     +I YEVRA++
Subjt:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D2U7 uncharacterized protein LOC111017066 isoform X1

1.3e-17

52.63

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Query:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK
        YGLC DVNYQDAW EGVIF  +    +RR+FF +LGDEL+VG               DWQR GTWSF+ELI QCE+   +     +I YEVRA+K
Subjt:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK

A0A6J1D5A7 uncharacterized protein LOC111017066 isoform X2

1.3e-17

52.63

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Query:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK
        YGLC DVNYQDAW EGVIF  +    +RR+FF +LGDEL+VG               DWQR GTWSF+ELI QCE+   +     +I YEVRA+K
Subjt:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK

A0A6J1FYG6 uncharacterized protein LOC111448635

7.1e-16

49.47

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Query:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK
        YG C DVNYQDAW EGV+F  +    +RRIFF +LGDEL VG               DWQR GTWSF+EL+ QCE+   +     +I YEVRA++
Subjt:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK

A0A6J1JAH1 uncharacterized protein LOC111484026

7.1e-16

49.47

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Query:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK
        YG C DVNYQDAW EGV+F  +    +RRIFF +LGDEL VG               DWQR GTWSF+EL+ QCE+   +     +I YEVRA++
Subjt:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK

A0A6J1L1Q7 uncharacterized protein LOC111499614 isoform X2

1.0e-14

48.94

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Query:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAE
        YGLC DV YQDAW EGV+F  +   ++RRIFF +LGDEL VG               DW+  GTWSF+ELI +CEK   +     +I YEVRA+
Subjt:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG-------------EMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G58610.1 PHD finger transcription factor, putative

4.4e-10

33.7

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Query:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG------EMDWQRC-------GTWSFIELISQCEKIPTILFLSSKIRYEVR
        YGLC DV + DAW EGV+F  +    +RR+FF +LGDEL+          DW          G+W F++LI   ++   +     ++ Y++R
Subjt:  YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVG------EMDWQRC-------GTWSFIELISQCEKIPTILFLSSKIRYEVR

Sequences

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CDS sequence

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TATGGACTGTGTTTTGATGTGAATTACCAGGATGCATGGACGGAAGGTGTTATTTTTGGTTCACAACAGAGGAGGATGCAGAGGAGGATTTTCTTTCTGAATTTGGGTGA
TGAATTGGAGGTTGGAGAGATGGATTGGCAGAGATGTGGGACCTGGTCGTTTATTGAGTTAATTTCTCAATGTGAAAAGATTCCTACCATCCTGTTTCTTTCAAGCAAAA
TACGGTATGAAGTTCGGGCAGAAAAG

mRNA sequence

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Protein sequence

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YGLCFDVNYQDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVGEMDWQRCGTWSFIELISQCEKIPTILFLSSKIRYEVRAEK

MS011018 (gene) of Bitter gourd (TR) v1 genome