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MS011031 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011031
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase arkadia-A, putative
Genome locationscaffold35:3771798..3772166
RNA-Seq ExpressionMS011031
SyntenyMS011031
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052530.1 putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]2.0e-5389.43Show/hide
Query:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
        + +SHKLQNIPSFKLSRYSS ARDSDAGDDLRY SLKDILLNSPSYSGVNDFN+FNSSNISIRNELVKRAASAYLQSAAILVSRNES FV FWERLR KL
Subjt:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL

Query:  AALRSRWWDCFHHVFGFFTFALD
        AALRSRW DCFH +FGFF+FALD
Subjt:  AALRSRWWDCFHHVFGFFTFALD
XP_022146509.1 uncharacterized protein LOC111015712 [Momordica charantia]1.0e-49100Show/hide
Query:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
        ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
Subjt:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL

Query:  AALRSR
        AALRSR
Subjt:  AALRSR
XP_022925985.1 uncharacterized protein LOC111433238 [Cucurbita moschata]9.7e-4883.33Show/hide
Query:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
        + + HKLQN+PSFKLSRYSS  RDSDAGDDLRY SLKDILLNSPSYSGVN+FN+FN SNI+IRNELVKRAASAYLQSAAILV RNESCFV FWERLR KL
Subjt:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL

Query:  AALRSRWWDCFHHVFGFFTF
        AALRSRW DCF   FGFF F
Subjt:  AALRSRWWDCFHHVFGFFTF
XP_022977989.1 uncharacterized protein LOC111478115 [Cucurbita maxima]3.3e-4883.47Show/hide
Query:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
        + + HKLQN+PSFKLSRYSS  RDSDAGDDLRY SLKDILLNSPSYSGVN+FN+FN SNI+IRNELVKRAASAYLQSAAILV RNESCFV FWERLR KL
Subjt:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL

Query:  AALRSRWWDCFHHVFGFFTFA
        AALRSRW DCF   FGFF FA
Subjt:  AALRSRWWDCFHHVFGFFTFA
XP_023544918.1 uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]3.3e-4883.47Show/hide
Query:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
        + + HKLQN+PSFKLSRYSS  RDSDAGDDLRY SLKDILLNSPSYSGVN+FN+FN SNI+IRNELVKRAASAYLQSAAILV RNESCFV FWERLR KL
Subjt:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL

Query:  AALRSRWWDCFHHVFGFFTFA
        AALRSRW DCF   FGFF FA
Subjt:  AALRSRWWDCFHHVFGFFTFA
TrEMBL top hitse value%identityAlignment
A0A0A0KKP9 Uncharacterized protein4.1e-5286.99Show/hide
Query:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
        + + H+LQNIPSFKLSRYSS ARDSDA DDLRY SLKDILLNSPSYSGVNDFN+FNSSNISIRNELVKRAASAYLQSAAILVSRNES FV FWERLR KL
Subjt:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL

Query:  AALRSRWWDCFHHVFGFFTFALD
        AALRSRW DCFH +FGFF+FALD
Subjt:  AALRSRWWDCFHHVFGFFTFALD
A0A5A7UBK0 Putative E3 ubiquitin-protein ligase arkadia-A9.8e-5489.43Show/hide
Query:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
        + +SHKLQNIPSFKLSRYSS ARDSDAGDDLRY SLKDILLNSPSYSGVNDFN+FNSSNISIRNELVKRAASAYLQSAAILVSRNES FV FWERLR KL
Subjt:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL

Query:  AALRSRWWDCFHHVFGFFTFALD
        AALRSRW DCFH +FGFF+FALD
Subjt:  AALRSRWWDCFHHVFGFFTFALD
A0A6J1CYB8 uncharacterized protein LOC1110157125.0e-50100Show/hide
Query:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
        ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
Subjt:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL

Query:  AALRSR
        AALRSR
Subjt:  AALRSR
A0A6J1EJR7 uncharacterized protein LOC1114332384.7e-4883.33Show/hide
Query:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
        + + HKLQN+PSFKLSRYSS  RDSDAGDDLRY SLKDILLNSPSYSGVN+FN+FN SNI+IRNELVKRAASAYLQSAAILV RNESCFV FWERLR KL
Subjt:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL

Query:  AALRSRWWDCFHHVFGFFTF
        AALRSRW DCF   FGFF F
Subjt:  AALRSRWWDCFHHVFGFFTF
A0A6J1ISV4 uncharacterized protein LOC1114781151.6e-4883.47Show/hide
Query:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL
        + + HKLQN+PSFKLSRYSS  RDSDAGDDLRY SLKDILLNSPSYSGVN+FN+FN SNI+IRNELVKRAASAYLQSAAILV RNESCFV FWERLR KL
Subjt:  ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKL

Query:  AALRSRWWDCFHHVFGFFTFA
        AALRSRW DCF   FGFF FA
Subjt:  AALRSRWWDCFHHVFGFFTFA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18395.1 unknown protein8.9e-0734.78Show/hide
Query:  DSDAGDDLRYISLKDILLNS---------PSYSGVND----FNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKLAA
        D +  ++L+Y SLKD++ +S         P YS  +      ++ +SSNI+I NELVKRAAS Y+QS+ I+++ + + F  F  + +++  A
Subjt:  DSDAGDDLRYISLKDILLNS---------PSYSGVND----FNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKLAA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTCGGAATCCCACAAGCTCCAGAACATACCTTCTTTCAAGCTGTCCCGGTACTCCTCCGGCGCACGCGACTCCGACGCCGGCGACGACCTCCGCTACATCAGCCTCAA
AGACATCCTCCTGAACTCCCCCTCCTACAGCGGCGTCAACGACTTCAACGACTTCAATTCCTCCAACATCTCCATTCGGAATGAGCTCGTCAAGCGCGCCGCCTCCGCCT
ACCTCCAATCGGCGGCCATCCTCGTCAGCCGCAACGAAAGCTGCTTCGTCAGCTTCTGGGAACGCCTCCGGAACAAACTCGCCGCCCTCCGCTCCCGCTGGTGGGATTGC
TTTCACCACGTTTTTGGATTCTTTACTTTTGCCCTAGAC
mRNA sequenceShow/hide mRNA sequence
ATTTCGGAATCCCACAAGCTCCAGAACATACCTTCTTTCAAGCTGTCCCGGTACTCCTCCGGCGCACGCGACTCCGACGCCGGCGACGACCTCCGCTACATCAGCCTCAA
AGACATCCTCCTGAACTCCCCCTCCTACAGCGGCGTCAACGACTTCAACGACTTCAATTCCTCCAACATCTCCATTCGGAATGAGCTCGTCAAGCGCGCCGCCTCCGCCT
ACCTCCAATCGGCGGCCATCCTCGTCAGCCGCAACGAAAGCTGCTTCGTCAGCTTCTGGGAACGCCTCCGGAACAAACTCGCCGCCCTCCGCTCCCGCTGGTGGGATTGC
TTTCACCACGTTTTTGGATTCTTTACTTTTGCCCTAGAC
Protein sequenceShow/hide protein sequence
ISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVSFWERLRNKLAALRSRWWDC
FHHVFGFFTFALD