CuGenDBv2

Gene ID	MS011073
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transmembrane protein
Genome location	scaffold35:4155150..4155569
RNA-Seq Expression	MS011073
Synteny	MS011073
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022146536.1 uncharacterized protein LOC111015729 [Momordica charantia]

7.4e-68

100

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Query:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
        MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
Subjt:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV

Query:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK
        ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK
Subjt:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK

XP_022925668.1 uncharacterized protein LOC111433017 [Cucurbita moschata]

3.1e-50

80.58

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Query:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
        +IPIK  AAM V LPLIVAV     +ALEIRPSEHGLEFQSPPPAG+KSSPEM SFF G SSP PD  LPLPKAMNSSEAPGWWT RDGG+ R+RNALLV
Subjt:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV

Query:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK
        ATAA GITGVTLLVGS LFY+YKVKNQ  LPLSSNNNHK
Subjt:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK

XP_022926736.1 uncharacterized protein LOC111433768 [Cucurbita moschata]

1.0e-48

81.43

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Query:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
        MI IK  AAMAV L  IVA+ A    ALEIRPSEHGLEFQS P AGDKSSPEM SFFGG SSPTP+ ALPLPKAMNSSEAPGWWT RDGGD RLRNALLV
Subjt:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV

Query:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNN-NHK
        ATAA GITGVTLLVGS L+Y++KVKNQRSLPLSSNN NHK
Subjt:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNN-NHK

XP_023003567.1 uncharacterized protein LOC111497130 [Cucurbita maxima]

2.0e-49

81.16

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Query:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
        MI IK  AAMAV L  IVA+ A    ALEIRPSEHGLEFQSPP AGDKSSPEM SFFGG SSPTP+ ALPLPKAMNSSEAPGWWT RDGGD RLRNALLV
Subjt:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV

Query:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNH
        ATAA G+TGVTLLVGS L+Y++KVKNQRSLPLSSNNN+
Subjt:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNH

XP_023518243.1 uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo]

6.9e-50

82.14

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Query:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
        MI IK  AAMAV L  IVA+ A    ALEIRPSEHGLEFQSPP AGDKSSPEM SFFGG SSPTP+ ALPLPKAMNSSEAPGWWT RDGGD RLRNALLV
Subjt:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV

Query:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNN-NHK
        ATAA GITGVTLLVGS L+Y++KVKNQRSLPLSSNN NHK
Subjt:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNN-NHK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM65 Uncharacterized protein

8.6e-46

71.22

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Query:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
        MIPIK +AA+     LI ++ AV     EIRPSEHGLEFQSPPP GDKSSPEM SFFGG +SPTP+ ALP+PK +NSSE+PGWW   DGG+ RLRNALLV
Subjt:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV

Query:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK
        ATAA GITGVTLLVGS LFY++K KN+RS+PLS NNNHK
Subjt:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK

A0A6J1CZN3 uncharacterized protein LOC111015729

3.6e-68

100

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Query:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
        MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
Subjt:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV

Query:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK
        ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK
Subjt:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK

A0A6J1EFQ9 uncharacterized protein LOC111433768

4.9e-49

81.43

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Query:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
        MI IK  AAMAV L  IVA+ A    ALEIRPSEHGLEFQS P AGDKSSPEM SFFGG SSPTP+ ALPLPKAMNSSEAPGWWT RDGGD RLRNALLV
Subjt:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV

Query:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNN-NHK
        ATAA GITGVTLLVGS L+Y++KVKNQRSLPLSSNN NHK
Subjt:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNN-NHK

A0A6J1EFW4 uncharacterized protein LOC111433017

1.5e-50

80.58

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Query:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
        +IPIK  AAM V LPLIVAV     +ALEIRPSEHGLEFQSPPPAG+KSSPEM SFF G SSP PD  LPLPKAMNSSEAPGWWT RDGG+ R+RNALLV
Subjt:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV

Query:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK
        ATAA GITGVTLLVGS LFY+YKVKNQ  LPLSSNNNHK
Subjt:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK

A0A6J1KMY3 uncharacterized protein LOC111497130

9.8e-50

81.16

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Query:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV
        MI IK  AAMAV L  IVA+ A    ALEIRPSEHGLEFQSPP AGDKSSPEM SFFGG SSPTP+ ALPLPKAMNSSEAPGWWT RDGGD RLRNALLV
Subjt:  MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLV

Query:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNH
        ATAA G+TGVTLLVGS L+Y++KVKNQRSLPLSSNNN+
Subjt:  ATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G30515.1 unknown protein

3.8e-06

36.52

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Query:  LIVAVLAVKTT---ALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSS------PTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRN-ALLVATAAF
        LI+ ++ +++T   A E+RPS+HGLE+   P      S EM SFFG  SS       +P +++ LP A+ S   P     +D  D R+ N  L+V +   
Subjt:  LIVAVLAVKTT---ALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSS------PTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRN-ALLVATAAF

Query:  GITGVTLLVGSVLFY
        G++GV L+V S L Y
Subjt:  GITGVTLLVGSVLFY

AT4G21740.1 unknown protein

1.3e-09

34.46

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Query:  KIAAAMAVCLPLIVAVLAVKT---TALEIRPSEHGLEFQ-SPPPAGDKSSP-EMLSFFGG--RSSPTPDAALPLPK--AMNSSEAPGWWTRRDGGDTR--
        ++ ++ +  LPL +  L + T    A E+RPS+HGL++Q S PP    S P +M SFFG    SSP P     LPK  A +  +   WW  RDG   R  
Subjt:  KIAAAMAVCLPLIVAVLAVKT---TALEIRPSEHGLEFQ-SPPPAGDKSSP-EMLSFFGG--RSSPTPDAALPLPK--AMNSSEAPGWWTRRDGGDTR--

Query:  --LRNALLVATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK
          +R+  L A+   G++GV LLV   L Y ++ +        + N+ K
Subjt:  --LRNALLVATAAFGITGVTLLVGSVLFYVYKVKNQRSLPLSSNNNHK

Sequences

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CDS sequence

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CCGATGATTCCGATCAAAATAGCGGCGGCGATGGCCGTTTGCCTGCCGTTAATCGTGGCGGTCCTCGCCGTCAAAACGACGGCGCTGGAGATTCGGCCGTCGGAGCACGG
GCTGGAGTTTCAGAGCCCTCCCCCGGCGGGAGACAAATCGTCGCCGGAGATGCTGTCGTTCTTTGGAGGAAGATCATCGCCGACACCGGATGCCGCATTGCCGTTGCCGA
AGGCGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCGCCGTGACGGTGGAGATACGCGCCTTAGAAACGCATTATTGGTGGCGACGGCGGCGTTTGGAATAACAGGT
GTCACTTTACTAGTGGGTTCTGTGCTATTCTACGTTTATAAGGTCAAGAACCAAAGATCATTGCCATTATCTTCCAACAATAATCACAAG

mRNA sequence

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Protein sequence

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PMIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGRSSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLVATAAFGITG
VTLLVGSVLFYVYKVKNQRSLPLSSNNNHK

MS011073 (gene) of Bitter gourd (TR) v1 genome