; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS011089 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011089
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSmall nuclear ribonucleoprotein-associated protein
Genome locationscaffold35:4338417..4339265
RNA-Seq ExpressionMS011089
SyntenyMS011089
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017131 - Small ribonucleoprotein associated, SmB/SmN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052454.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa]1.3e-14097.87Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSAAR
        MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPP  PPQFSAAR
Subjt:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSAAR

Query:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        PGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_004134546.1 small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus]5.9e-14197.18Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+GRGMPPP  PPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_008439504.1 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo]1.6e-14197.89Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPP  PPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_022925730.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata]2.4e-14298.24Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPG-PPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPG PPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPG-PPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP++GPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_038882444.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida]1.8e-14298.59Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP  PPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KPA9 Small nuclear ribonucleoprotein-associated protein2.9e-14197.18Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+GRGMPPP  PPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A1S3AZK2 Small nuclear ribonucleoprotein-associated protein7.6e-14297.89Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPP  PPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A5A7UAP6 Small nuclear ribonucleoprotein-associated protein6.4e-14197.87Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSAAR
        MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPP  PPQFSAAR
Subjt:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP-GPPQFSAAR

Query:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        PGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1EJ14 Small nuclear ribonucleoprotein-associated protein1.2e-14298.24Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPG-PPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPG PPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPG-PPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP++GPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1IQN3 Small nuclear ribonucleoprotein-associated protein8.4e-14196.83Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTN+ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPG-PPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPG PPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPG-PPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPF VPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP++GPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

SwissProt top hitse value%identityAlignment
P14678 Small nuclear ribonucleoprotein-associated proteins B and B'1.7e-4553.28Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPQ
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP   GPP 
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPQ

Query:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
             PG  PP   P  +PP     PMG PP G  MR    PP PGM  PPP PGM PP
Subjt:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

P17136 Small nuclear ribonucleoprotein-associated protein B1.8e-4452.87Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPQ
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP   GPP 
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPQ

Query:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPR
             PG  PP   P  +PP     PMG PP G  MR PPP  R
Subjt:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPR

Q58DW4 Small nuclear ribonucleoprotein-associated protein B'2.4e-4449.27Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPQFSA
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+        PPP+GRG PPPG      
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP
                             MGPPP  +   GPP   PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP

Q9N1Q0 Small nuclear ribonucleoprotein-associated protein B'5.7e-4649.63Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPQFSA
         A  GPGIGRAAGRG+P   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPPG      
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP
                     PP   + PMG PPTG        PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP

Q9TU67 Small nuclear ribonucleoprotein-associated protein B'3.7e-4552.9Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPQ
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP   GPP 
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---GPPQ

Query:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
             PG  PP   P  +PP     PMG PP G  MR    PP PGM  PPP PG+ PP
Subjt:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Arabidopsis top hitse value%identityAlignment
AT4G20440.1 small nuclear ribonucleoprotein associated protein B2.9e-9375.7Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPQF
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPQF

Query:  SAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
           RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  SAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT4G20440.2 small nuclear ribonucleoprotein associated protein B2.9e-9375.7Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPQF
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPQF

Query:  SAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
           RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  SAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT4G20440.3 small nuclear ribonucleoprotein associated protein B2.9e-9375.7Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPQF
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPQF

Query:  SAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
           RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  SAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT4G20440.4 small nuclear ribonucleoprotein associated protein B2.9e-9375.7Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPQF
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPGPPQF

Query:  SAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
           RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  SAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT5G44500.1 Small nuclear ribonucleoprotein family protein5.8e-8671.02Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN
        MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPP KG KKTNEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN

Query:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPQFSA
          A+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               +IRPPGQMP      PP  G+G PPP       
Subjt:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPQFSA

Query:  ARPGGAPPQPFPVPPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPVFGPPRPGMPP-PPNPQNQQ
           G  PP P P PPQ+   QRPM  PP G +MRGPPPP   GM  PPP RPGMPPP  G  P+F PP PGMPP PPN  NQQ
Subjt:  ARPGGAPPQPFPVPPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPVFGPPRPGMPP-PPNPQNQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGTCAAAGAGTTCAAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAGGACGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGACCGCCA
CATGAACCTTGTGCTCGGCGACTGTGAAGAGTTTCGTAAGCTTCCCCCGGGTAAGGGTAAGAAGACTAATGAGGAGCGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTC
TACGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTTAATGCTGCAGCCATGGCTGGCCCTGGTATAGGCCGC
GCCGCTGGCAGGGGGATCCCGACTGCTCCTCTGGTTCAGGCTCAGCCTGGTCTTGCTGGCCCAGTTCGTGGAGTTGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCGCCTGTACCGCAGCTGTCCGCGCCGCCGATGACATACCCGGCTGCCCCTGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGGCAGGCTCCGCCTC
CTGTAGGGAGAGGAATGCCTCCGCCGGGGCCTCCACAATTCTCAGCAGCGAGACCAGGGGGAGCCCCGCCACAGCCATTCCCAGTTCCCCCCCAGTTTGCACAGAGACCC
ATGGGGCCACCACCAACCGGGCAGGTCATGAGGGGACCGCCACCACCTCCCAGGCCTGGAATGCCTGCTCCACCACCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGC
AGTTCCTGTGTTCGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAGAATCAGCAGCAAAATCAACAGCAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGTCAAAGAGTTCAAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAGGACGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGACCGCCA
CATGAACCTTGTGCTCGGCGACTGTGAAGAGTTTCGTAAGCTTCCCCCGGGTAAGGGTAAGAAGACTAATGAGGAGCGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTC
TACGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTTAATGCTGCAGCCATGGCTGGCCCTGGTATAGGCCGC
GCCGCTGGCAGGGGGATCCCGACTGCTCCTCTGGTTCAGGCTCAGCCTGGTCTTGCTGGCCCAGTTCGTGGAGTTGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCGCCTGTACCGCAGCTGTCCGCGCCGCCGATGACATACCCGGCTGCCCCTGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGGCAGGCTCCGCCTC
CTGTAGGGAGAGGAATGCCTCCGCCGGGGCCTCCACAATTCTCAGCAGCGAGACCAGGGGGAGCCCCGCCACAGCCATTCCCAGTTCCCCCCCAGTTTGCACAGAGACCC
ATGGGGCCACCACCAACCGGGCAGGTCATGAGGGGACCGCCACCACCTCCCAGGCCTGGAATGCCTGCTCCACCACCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGC
AGTTCCTGTGTTCGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAGAATCAGCAGCAAAATCAACAGCAA
Protein sequenceShow/hide protein sequence
MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGR
AAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPQFSAARPGGAPPQPFPVPPQFAQRP
MGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ