; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS011091 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS011091
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein LSD1
Genome locationscaffold35:4353068..4357378
RNA-Seq ExpressionMS011091
SyntenyMS011091
Gene Ontology termsGO:0007034 - vacuolar transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005768 - endosome (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052452.1 vacuolar protein sorting-associated protein 2-like protein 2 [Cucumis melo var. makuwa]6.4e-9098.24Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
        KCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
Subjt:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK

XP_008439499.1 PREDICTED: protein LSD1 [Cucumis melo]1.7e-9098.25Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

XP_011658526.1 vacuolar protein sorting-associated protein 2 homolog 2 [Cucumis sativus]1.7e-9098.25Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

XP_022146603.1 protein LSD1 [Momordica charantia]1.5e-9199.42Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRS+LLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

XP_022925664.1 vacuolar protein sorting-associated protein 2 homolog 2-like [Cucurbita moschata]2.4e-8996.49Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALC+TVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAIC YVTNVG+SNVRVPIPVHRRNGT+SSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

TrEMBL top hitse value%identityAlignment
A0A0A0KJ18 Uncharacterized protein8.2e-9198.25Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

A0A1S3AZJ7 protein LSD18.2e-9198.25Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

A0A5A7U9M7 Vacuolar protein sorting-associated protein 2-like protein 23.1e-9098.24Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
        KCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
Subjt:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK

A0A6J1CZ01 protein LSD17.4e-9299.42Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRS+LLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

A0A6J1ECU7 vacuolar protein sorting-associated protein 2 homolog 2-like1.2e-8996.49Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV
        MQSQLVCSGCRSILLYPGGATNVCCALC+TVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSV
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSV

Query:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        KCAIC YVTNVG+SNVRVPIPVHRRNGT+SSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  KCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

SwissProt top hitse value%identityAlignment
P94077 Protein LSD19.1e-6366.84Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

Q0J7V9 Protein LSD11.8e-4775.22Show/hide
Query:  QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVK
        QSQLVCSGCR++L+YP GAT+VCCA+C+TVT+VP PGT+MAQL+CGGC TLLMY RGATSV+CSCCHTVNLA   NQVAHVNCGNCR  L++ YGA SVK
Subjt:  QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVK

Query:  CAICQYVTNVGIS
        CA+C +VT+VG S
Subjt:  CAICQYVTNVGIS

Q2QMB3 Protein LOL23.1e-5563.31Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTS-VPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPS
        MQSQ+VC GCR+ILLYP GA +VCCA+C+ V+S  P PG D+A LICGGCRTLLMY R ATSVRCSCC TVNL    + +AH+NCG C+T L++PYGAPS
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTS-VPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPS

Query:  VKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTT
        VKCAIC ++TN G++ +R  +P +  + T  S   P + SQ+ TVVVENPM+VD  GKLVSNVVVGVTT
Subjt:  VKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTT

Q6ASS2 Protein LOL34.8e-5660.22Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPG--TDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAP
        MQSQ+VC GCRS+L YP GA +VCCALC  +T+VPPP    +MA LICGGCRTLLMY R A +VRCSCC TVNL    N +AHV+CG CRTTL++PYGAP
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPG--TDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAP

Query:  SVKCAICQYVTNVGISNVR-VPIPVHRRNGTISSGMP-------------PASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
        SVKCAIC Y+TN G++ V   P P+   +G+  +  P             P S  Q+ TVVVENPM+VDE GKLVSNVVVGVTT K
Subjt:  SVKCAICQYVTNVGISNVR-VPIPVHRRNGTISSGMP-------------PASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK

Q93ZB1 Protein LOL17.0e-4775.68Show/hide
Query:  QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVK
        QSQLVCSGCR++L+YP GAT+VCCA+CN VT+VPPPGT+MAQL+CGGC TLLMY RGATSV+CSCCHTVNLA   NQVAHVNCGNC   L++ YGA SVK
Subjt:  QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVK

Query:  CAICQYVTNVG
        CA+C +VT+VG
Subjt:  CAICQYVTNVG

Arabidopsis top hitse value%identityAlignment
AT4G20380.1 LSD1 zinc finger family protein6.4e-6466.84Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.2 LSD1 zinc finger family protein6.4e-6466.84Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.3 LSD1 zinc finger family protein6.4e-6466.84Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.4 LSD1 zinc finger family protein6.4e-6466.84Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.5 LSD1 zinc finger family protein6.4e-6466.84Show/hide
Query:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT
        MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRT
Subjt:  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRT

Query:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        TL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  TLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAGCCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCTGGAGGAGCTACCAATGTATGCTGTGCATTATGCAATACAGTCACCTCGGTTCCTCCTCC
TGGAACGGATATGGCTCAACTTATATGTGGAGGTTGCAGGACATTGCTTATGTATGCACGTGGGGCAACAAGTGTTAGATGCTCATGCTGTCATACAGTGAACCTTGCAC
CTGTAACGAACCAGGTTGCGCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCATATGGAGCTCCATCTGTCAAGTGTGCGATCTGTCAATATGTTACTAAT
GTTGGTATATCCAATGTGAGGGTTCCTATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCTCCTGCATCATCATCTCAGAGCCAAACTGTTGTAGTTGA
GAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATGTTGTTGTCGGTGTGACAACAGATAAAAGG
mRNA sequenceShow/hide mRNA sequence
ATGCAGAGCCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCTGGAGGAGCTACCAATGTATGCTGTGCATTATGCAATACAGTCACCTCGGTTCCTCCTCC
TGGAACGGATATGGCTCAACTTATATGTGGAGGTTGCAGGACATTGCTTATGTATGCACGTGGGGCAACAAGTGTTAGATGCTCATGCTGTCATACAGTGAACCTTGCAC
CTGTAACGAACCAGGTTGCGCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCATATGGAGCTCCATCTGTCAAGTGTGCGATCTGTCAATATGTTACTAAT
GTTGGTATATCCAATGTGAGGGTTCCTATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCTCCTGCATCATCATCTCAGAGCCAAACTGTTGTAGTTGA
GAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATGTTGTTGTCGGTGTGACAACAGATAAAAGG
Protein sequenceShow/hide protein sequence
MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTN
VGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR